BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0859.p (243 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 82 4e-17 gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 80 1e-16 gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Jant... 80 1e-16 gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Jant... 70 1e-13 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 69 2e-13 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 81.6 bits (200), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 18/230 (7%) Query: 8 KIAVITGAASGIGLATTEKLLANDATVVMVDWNAKALEE--LAARLGP---KAIPQVTNL 62 K+A+ITGA+ GIG A E+L A D V++++ + A E L A+L +AI ++ Sbjct: 7 KVAIITGASRGIGAAIAERL-AQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADV 65 Query: 63 LDADSCAAMVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMKNVHA 122 ++ + E QK+ +D+L NAG L +TS E ++ ++NV + Sbjct: 66 ANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTFNTLRE 125 Query: 123 VAPHMIARKTGDIIVTCS---VAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVG 179 A + G +V S VA P Y VY GSK A+ ++M + V Sbjct: 126 AATRL---NDGGRVVNFSSTTVAMSLPNY--SVYTGSKAAVEVLTPIFAKEMRGRNITVN 180 Query: 180 QVSPGPVISALLADWPEE----NLRKAKESGSLIEPSEVADAVEYMLTRN 225 V+PGPV + L + E L L +P ++A AV +++ R+ Sbjct: 181 AVAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRD 230 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 16/240 (6%) Query: 9 IAVITGAASGIGLATTEKLLANDATVVMVDWNAKALEELAARLGPKAIPQVTNLLDADSC 68 I ++TGA SG G K + V+ L+ LAA +GP + ++ D +S Sbjct: 2 IVLVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDALAAEIGPSVLTVAMDVTDKESI 61 Query: 69 AAMVPEVLQKVAHIDILYCNAGTYIG-GELVDTSAEAIDKMLNLNVNAVMKNVHAVAPHM 127 AA + + + ID+L NAG +G S E + M+ N ++ + P M Sbjct: 62 AAALAGLPPEWKEIDVLINNAGLALGVAPAQSASLEQWETMIETNCKGLVTVTRLLLPEM 121 Query: 128 IARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQVSPGPVI 187 + R G II S AG + VY +K + F + +R ++ GVR ++PG Sbjct: 122 LKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRASNIAPG--- 178 Query: 188 SALLADWPE-ENLR--------KAKESGSLIEPSEVADAVEYMLTRNRNVTIRDMLVLPT 238 LA E N+R K E + + P+++A+ ++ T +V I + ++PT Sbjct: 179 ---LAGGTEFSNVRLKDDAAAAKVYEGTTPLSPADIAETAYWIATLPAHVNINHIELMPT 235 >gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 282 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 8/205 (3%) Query: 11 VITGAASGIGLATTEKLLANDATVVMVDWNAKALEELAARLGPKAIPQVTNLLDADSCAA 70 +ITG +SG G A E L TV+ N A + +AI V ++ D + A Sbjct: 10 LITGVSSGFGRAFAETALREGHTVIGTVRNDAAKRDFEDLAIGRAIGVVLDVTDFSAIDA 69 Query: 71 MVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMKNVHAVAPHMIAR 130 V KV +D+L NAG G L ++ E + ++NV + + AV P M AR Sbjct: 70 AVASASSKVGPVDVLVNNAGYGHEGILEESPLEEMRHQFDVNVFGAVAMIKAVLPSMRAR 129 Query: 131 KTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQVSPGPVISAL 190 +TG II S+ G Y GSK+A+ +T+ +++ G++V V+PG + Sbjct: 130 RTGHIINITSMGGFITMPGIAYYCGSKFALEGISETLAKEVAGFGIKVTAVAPG----SF 185 Query: 191 LADWPEENLRKAKES----GSLIEP 211 DW ++ ++ S LI+P Sbjct: 186 RTDWAGRSMVRSSRSIADYDKLIDP 210 >gi|152981015|ref|YP_001352800.1| Short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 266 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 7/224 (3%) Query: 10 AVITGAASGIGLATTEKLLANDATVVMVDWNAKALEELAARLGPKAIPQVTNLLDADSCA 69 A+ITGA++GIG ++L +V+V N +E LAA L + ++ ++ + A Sbjct: 13 ALITGASTGIGAVYADRLARRGHNLVLVARNGARMEALAASLRQETGVEIEVIVADLTKA 72 Query: 70 AMVPEV---LQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAVMKNVHAVAPH 126 A + +V L+ + IL NAG G + EA + ++ LNV A+ + AV P Sbjct: 73 ADLAKVEARLRDQRDVGILINNAGAAAPGGFETSDVEAQENLIKLNVTALTRLGAAVVPR 132 Query: 127 MIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQVSPGPV 186 +A+ G I+ SV P + VY +K + + Q ++ ++ G+ V V P Sbjct: 133 FLAQGQGAIVNIASVVALAPEFPLGVYGATKAYVLAYSQALQVELGARGLYVQAVLPAAT 192 Query: 187 ISALLADWPEENLRKAKESGSLIEPSEVADAVEYMLTRNRNVTI 230 + + W E + R +E ++E E+ DA R +TI Sbjct: 193 RTEI---W-ERSGRDVEEIQGVMEVDELVDAALVGFDRGELITI 232 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 9/191 (4%) Query: 2 TQSLAGKIAVITGAASGIGLATTEKLLANDATVVMVDW-----NAKALEELAARLGPKAI 56 T L GK+A + G + GIG A ++L A D V + AKA+ + G +A+ Sbjct: 4 TNQLTGKVAFVQGGSRGIGAAIVKRL-ARDGAAVAFTYVSSADKAKAVAQEIEAAGGRAL 62 Query: 57 PQVTNLLDADSCAAMVPEVLQKVAHIDILYCNAGTYIGGELVDTSAEAIDKMLNLNVNAV 116 + DA + + + IDIL NAG + D E D+ + +NV +V Sbjct: 63 AIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSV 122 Query: 117 MKNVHAVAPHMIARKTGDIIVTCSV-AGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHG 175 A HM + G II S A P VYA SK AI + + R + P G Sbjct: 123 FVATQEAARHM--GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRG 180 Query: 176 VRVGQVSPGPV 186 + V V PGPV Sbjct: 181 ITVNNVQPGPV 191 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 547,265 Number of extensions: 21563 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 20 Length of query: 243 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 162 Effective length of database: 921,564 Effective search space: 149293368 Effective search space used: 149293368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)