BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0857.p (502 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 284 1e-77 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 245 6e-66 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 128 7e-31 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 124 9e-30 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 120 2e-28 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 284 bits (726), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 176/491 (35%), Positives = 266/491 (54%), Gaps = 17/491 (3%) Query: 2 LQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRID 61 L+L I K + V G+++ V GE+HA+LGENGAGKSTLMKI+ G V PDAG++ + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 62 GQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAAR 121 G+ + A G+ +VFQ FSL L V+N+ L + L E+ RR + Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLPHDTKLD-----ELARRISD 119 Query: 122 IIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVM 181 Q G+E+ V LSV + Q VEI +AL + ++L+LDEPT+ LTP VE LF + Sbjct: 120 TAEQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETL 179 Query: 182 RGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIEN 241 R L +G +I++ISH L+EI +CD TV+R G C E A L MM+G Sbjct: 180 RKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIG----- 234 Query: 242 CFPPKSATTIAAAAEVVLEVQELQLKRNAPVS------RFQLRRGEILGFAGLVGSGRTE 295 C PP + + + +L V+ L LK+N P + F+LR GEILG AG+ G+G+ E Sbjct: 235 CEPPPIKHVLRSPGQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQE 294 Query: 296 TVLAMLGAHPALRCKLS-MRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNIS 354 + A+ G P ++ ++G + +PAQ + G+G +PE R +G + + NI Sbjct: 295 LLAALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNIL 354 Query: 355 LNNYGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVIARWINH 414 L++ F+ + + + R VKA HA +LSGGN QK ++ R + Sbjct: 355 LSHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMR 414 Query: 415 HMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGG 474 + +VLI +PT G+DVGA A+I + G ++++IS EL E+ +SDR+ V G Sbjct: 415 NPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGR 474 Query: 475 IVATVEGAAVT 485 + ++ +A T Sbjct: 475 LSPSIASSAAT 485 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 245 bits (625), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 173/506 (34%), Positives = 263/506 (51%), Gaps = 37/506 (7%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 +L++ G+ K FG VL + + V AGEVH LLGENGAGKSTL ++ G+ PDAG I+ Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 120 DG R A+ G+ +V Q FSL+ + V+N+ L R +L + + RR Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGR----AQAILKQDFIIRRMQ 118 Query: 121 RIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRV 180 + + ++I V LSV ++Q +EI K L R+L+LDEPTA L P EV+ L V Sbjct: 119 ELADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAV 178 Query: 181 MRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIE 240 R + E G +I ++H L EI ++ DR +VLR G V S + D LV MVGR ++ Sbjct: 179 CRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDVK 238 Query: 241 NCFPPKSAT--TIAAAAE--------------------VVLEVQELQLKRNAPVSR---- 274 + +AT ++ AA+ L++Q L + V+R Sbjct: 239 SGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSDV 298 Query: 275 -FQLRRGEILGFAGLVGSGRTETVLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGL 333 + RGEI+G AG+ G+G++E + G + + L + AG G+ Sbjct: 299 HLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITDAGAGI 358 Query: 334 LPESRKEQGLITSFPILHNISLNNYGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHA 393 +PE R I+ + N+ L + K+ + GL LDR + A+ M V+A +A Sbjct: 359 IPEDRHAVACISELSVAENLFLGSLEKFSRFGL-LDREKMAKQAATMMTEFDVRATSPNA 417 Query: 394 RVDTLSGGNQQKVVIARWINHHMQVLIF---DEPTRGIDVGAKAEIYQLMREFTAQGYSI 450 + +LSGGNQQK V+AR ++ + LIF +PTRG+DVGA ++ +R + G + Sbjct: 418 PMSSLSGGNQQKAVLARELS--LDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNGLGV 475 Query: 451 IMISSELPEVVGMSDRVCVFKGGGIV 476 ++ISS+L E++ +SDRV V G IV Sbjct: 476 LLISSDLNELIAVSDRVAVLYRGAIV 501 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 11/238 (4%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 +L + G+ K FG + L V++K+ G+++ L+G NGAGK+T +++G+ D G + Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLL---------- 110 G+P + H+ AG+ FQ L + A++N+ + R +R+ GL Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 111 -MRAEMRRRAARIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATL 169 AE+R+RA ++ +G+ + LS Q+ +EIA+ALA + ++L LDEP A + Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 185 Query: 170 TPAEVEHLFRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQ 227 E L ++ ++ +G I+ I H ++ + +CDRITVL G +A +V + Sbjct: 186 NATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQK 243 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 15/212 (7%) Query: 276 QLRRGEILGFAGLVGSGRTETVLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLP 335 ++ +G+I G G G+G+T + G + A + G P + P + +AGI Sbjct: 28 KIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELAGKPYSPSAPHKVAKAGIARTF 87 Query: 336 ESRKEQGLITSFPILHNISLNNYGKYRKGGLF-------LDRRREAQATQAAMRR---VG 385 ++ + G +T+ L N+ + + + +G LF RR EA+ Q AM VG Sbjct: 88 QNIRLFGEMTA---LENVMIGRHVRTHQG-LFGAVFHHKAARREEAEIRQRAMELLEFVG 143 Query: 386 VKAPDAHARVDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTA 445 + A A LS G+Q+++ IAR + Q+L DEP G++ K + +L+ + A Sbjct: 144 I-AKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIKA 202 Query: 446 QGYSIIMISSELPEVVGMSDRVCVFKGGGIVA 477 +G +I++I ++ ++G+ DR+ V G +A Sbjct: 203 EGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 2 LQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRID 61 L + G++K++G V+R V ++V +GEV LLG NGAGK+T ++ G+V DAG I +D Sbjct: 5 LIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 62 GQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLG-LLMRAEMRRRAA 120 G H+ G+ + QE S+ L DN+ EL+ G L A++ +R Sbjct: 65 GVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQRLD 124 Query: 121 RIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRV 180 ++A L +E + LS +++ VEIA+ALA R ++LDEP A + P V + R+ Sbjct: 125 TLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRI 184 Query: 181 MRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEV 225 +R L+E+G+ ++ H++ E ICDR ++ GA +AS +++ Sbjct: 185 VRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDI 229 Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%) Query: 275 FQLRRGEILGFAGLVGSGRTETVLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLL 334 Q+ GE++G G G+G+T + ++G P+ ++ + GV + + Q G+ L Sbjct: 25 LQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDISRLPIHKRAQLGLSYL 84 Query: 335 PESRKEQGLITSFPILHNI------------SLNNYG-KYRKGGLFLDRRREAQATQAAM 381 P+ E + + NI +LN+ + R L D + E AM Sbjct: 85 PQ---EASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQRLDTLLADLQIEKLRENQAM 141 Query: 382 RRVGVKAPDAHARVDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMR 441 +LSGG +++V IAR + + + ++ DEP G+D A EI +++R Sbjct: 142 ---------------SLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVR 186 Query: 442 EFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVEGAAVTAAE 488 +G +++ + E +G+ DR + G ++A+ + A E Sbjct: 187 FLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIANE 233 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 127/217 (58%), Gaps = 8/217 (3%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 ++ + +KK++G VL+G+ M V GEV A++G++G+GKSTL++ ++G+ S D G I + Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 61 DGQPC-RFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGL--LMRAEMRR 117 G + + + + VG++FQ+F+L P+L N+ + SP+ + + + R Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMI-----SPMIVKGVSEKDARA 117 Query: 118 RAARIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHL 177 A + + ++G+ D +LS QQQ V IA+AL++E + L+ DE T+ L P V + Sbjct: 118 LAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEV 177 Query: 178 FRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDG 214 V+RGL +G+ +I ++H + E+CDR+ + G Sbjct: 178 LNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQG 214 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,041,820 Number of extensions: 41140 Number of successful extensions: 423 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 77 Length of query: 502 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 415 Effective length of database: 899,382 Effective search space: 373243530 Effective search space used: 373243530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)