BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0854.p
         (238 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980778|ref|YP_001354246.1| Mg2+ transport ATPase [Janthino...   310   7e-86
gi|152983104|ref|YP_001353458.1| MgtC family protein [Janthinoba...    57   1e-09

>gi|152980778|ref|YP_001354246.1| Mg2+ transport ATPase
           [Janthinobacterium sp. Marseille]
          Length = 238

 Score =  310 bits (793), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 201/238 (84%)

Query: 1   MQILANINLDSLLDTFISLAAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMAN 60
           M+ + NINL+SLLDT +SL+ AFILGGLIG ERQYRQRTAGLRTNVLVA+GAA+FVDMAN
Sbjct: 1   MEAIHNINLNSLLDTLLSLSTAFILGGLIGFERQYRQRTAGLRTNVLVAIGAAMFVDMAN 60

Query: 61  RLNGHEGAVHVVAYVVSGVGFLGAGVIMREEGNVRGINTAATLWGSAAVGAAAGADLILE 120
           RL+GH GA HV+AYVVSG+GFLGAGVIMREEGNVRGINTAATLWGSAA+GAAAGADLI E
Sbjct: 61  RLHGHAGATHVIAYVVSGIGFLGAGVIMREEGNVRGINTAATLWGSAAMGAAAGADLIFE 120

Query: 121 AILATIFVLAANTLLRPVVNTINRKPLDTPSVEVTNTIHLIVESAHQKRVLTAVTDMLEQ 180
           AIL TIF+LAANTLLRP+VN INR+PLD  S EVTNT+ +I    HQK VL  +   LE+
Sbjct: 121 AILGTIFILAANTLLRPIVNAINRQPLDVTSAEVTNTVCVITSREHQKVVLAMLEARLER 180

Query: 181 SRHPTHDLDVRPFTDDEVEIEATLAATSVDGDELDALVERLLALPAVKQAFWSPSTTD 238
           + +PT DLDV  F +++VEIEATLAATSVDG ELDALV +  A   VKQAFWS STT+
Sbjct: 181 ANYPTRDLDVHAFGEEDVEIEATLAATSVDGAELDALVRQFTASSLVKQAFWSASTTE 238


>gi|152983104|ref|YP_001353458.1| MgtC family protein
           [Janthinobacterium sp. Marseille]
          Length = 148

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 3/106 (2%)

Query: 24  ILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMA-NRLNGHEGAVHVVAYVVSGVGFL 82
           +LG +IGL+R+ +   AG+RT + +++G+  F  ++ + +NG      + A VVSG+GFL
Sbjct: 18  LLGAIIGLDRERQGSDAGVRTCMAISIGSCAFSLISLHVVNGEP--TRIAAQVVSGIGFL 75

Query: 83  GAGVIMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILATIFV 128
           GAGVI++  G + G+ TAATLW +A+VG A+   + + AIL T  +
Sbjct: 76  GAGVILQVRGRIEGLTTAATLWATASVGMASAFGMYVLAILTTALI 121


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 429,427
Number of extensions: 14485
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 158
Effective length of database: 925,261
Effective search space: 146191238
Effective search space used: 146191238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)