BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0852.p (283 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Jant... 102 2e-23 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 70 2e-13 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 65 4e-12 gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 63 2e-11 gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Jant... 60 1e-10 >gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 263 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 117/243 (48%), Gaps = 17/243 (6%) Query: 40 RIWLVGASSGIGAELARQALAAGARVALSARRADALQEI------AAGHQDAFIAPLDVL 93 R+++ GASSG+GA LARQ GA + L ARR + LQE+ AA HQ + LDV Sbjct: 7 RVFITGASSGLGAALARQYAQQGAVLGLVARRNEVLQELKAALPNAAEHQ---VYALDVN 63 Query: 94 CHDAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQEDEA--EHTIRTNLASVYSALG 151 H A A + GID+++ R + E ED E TN+ + + Sbjct: 64 DHAALAQAAADFINHAQGIDIVIANAGISRGTLT-EYAEDLQVFEQVFATNVTATVATFS 122 Query: 152 AALPDMLARGSGG-----IALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGL 206 + M + + G + + SVAG GLPGA Y K+A+I+ E L +L+ G+ Sbjct: 123 PFIATMQTQAAAGHTNCRLVGIGSVAGIRGLPGAGAYSASKSAVISYCESLRVELKKSGI 182 Query: 207 NVYLVNPGFVKTELTDKNDFAMPAMQTPQQAASAIWRGIAEGRFEIHFPLRFTAWLKLLR 266 V + PG++ T +T ND+AMP + + A IA G P + K+LR Sbjct: 183 KVVTIAPGYIDTPMTQVNDYAMPFLMPVGKFAEVATATIAAGCSYRVIPWQMGVVAKVLR 242 Query: 267 LLP 269 LLP Sbjct: 243 LLP 245 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 10/197 (5%) Query: 35 DLRGLRIWLVGASSGIGAELARQALAAGARVALSARRADALQ----EIAAGHQDAFIAPL 90 + G + GASSG+GA A+ AGA+V L++RR D L+ EI A A + L Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 91 DVLCHDAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQEDEAEHTIRTNLASVYSAL 150 DV + + + A G ID+LV +R +V ++ H + TN + Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVA 139 Query: 151 GAALPDMLARGSGG------IALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPK 204 M+AR G I + SVAG +P +Y KAA++++ + + + Sbjct: 140 QEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKF 199 Query: 205 GLNVYLVNPGFVKTELT 221 G+N + PG++ TE+ Sbjct: 200 GINTNAICPGYIGTEMN 216 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 9/201 (4%) Query: 30 NQPVSDLRGLRIWLVGASSGIGAELARQALAAGARVALSARRADALQEIAA-----GHQD 84 NQ +++ + + GA +GIG A G RVA+S RR +A +AA G++ Sbjct: 24 NQRSNEMNTPTVLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEA 83 Query: 85 AFIAPLDVLCHDAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQEDEAEH--TIRTN 142 F+ DV R+ + V FG ID+ V A + + V++ A + T N Sbjct: 84 EFLLA-DVRFEADVRNLVEQTVVRFGRIDVAVNN-AGTEGQLAPIVEQSAANYAETFGVN 141 Query: 143 LASVYSALGAALPDMLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLR 202 + +L + MLA+GSG I ++SVAG VG+ GASVY K A+ L + + Sbjct: 142 VLGTMLSLKHEMRVMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGA 201 Query: 203 PKGLNVYLVNPGFVKTELTDK 223 G+ V V PG V TE+ D+ Sbjct: 202 AAGVRVNAVAPGPVATEMLDR 222 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 10/195 (5%) Query: 41 IWLVGASSGIGAELARQALAAGARVALSARRADALQEIAAG-HQDAFIAPLDVLCHDAWR 99 + + GA+SG GAE+AR+ G +V + RR D L +AA +DV ++ Sbjct: 3 VLVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDALAAEIGPSVLTVAMDVTDKESIA 62 Query: 100 DQHARVVAAFGGIDLLVFCVA---KYRPERSWEVQEDEAEHTIRTNLASVYSALGAALPD 156 A + + ID+L+ P +S +++ E I TN + + LP+ Sbjct: 63 AALAGLPPEWKEIDVLINNAGLALGVAPAQSASLEQ--WETMIETNCKGLVTVTRLLLPE 120 Query: 157 MLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNVYLVNPGFV 216 ML R G I ++S AG PGA+VYG KA + L +DL G+ + PG Sbjct: 121 MLKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRASNIAPGLA 180 Query: 217 -KTELTD---KNDFA 227 TE ++ K+D A Sbjct: 181 GGTEFSNVRLKDDAA 195 >gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 282 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 7/185 (3%) Query: 39 LRIWLVGASSGIGAELARQALAAGARVALSARRADA---LQEIAAGHQDAFIAPLDVLCH 95 + + + G SSG G A AL G V + R A +++A G + LDV Sbjct: 7 MNLLITGVSSGFGRAFAETALREGHTVIGTVRNDAAKRDFEDLAIGRAIGVV--LDVTDF 64 Query: 96 DAWRDQHARVVAAFGGIDLLVFCVAKYRPERSWEVQE-DEAEHTIRTNLASVYSALGAAL 154 A A + G +D+LV A Y E E +E H N+ + + A L Sbjct: 65 SAIDAAVASASSKVGPVDVLVNN-AGYGHEGILEESPLEEMRHQFDVNVFGAVAMIKAVL 123 Query: 155 PDMLARGSGGIALVASVAGYVGLPGASVYGPGKAALINLAEILYSDLRPKGLNVYLVNPG 214 P M AR +G I + S+ G++ +PG + Y K AL ++E L ++ G+ V V PG Sbjct: 124 PSMRARRTGHIINITSMGGFITMPGIAYYCGSKFALEGISETLAKEVAGFGIKVTAVAPG 183 Query: 215 FVKTE 219 +T+ Sbjct: 184 SFRTD 188 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 543,047 Number of extensions: 20439 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 16 Length of query: 283 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 201 Effective length of database: 917,867 Effective search space: 184491267 Effective search space used: 184491267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)