BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0843.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 283 2e-77 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 248 7e-67 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 122 4e-29 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 115 9e-27 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 110 3e-25 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 283 bits (725), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 171/499 (34%), Positives = 279/499 (55%), Gaps = 24/499 (4%) Query: 19 IALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 78 + L +++KR+P V+A D + GE+HA++GENGAGKSTLMKI+ G + D+G +L + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 79 GKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNRQAA 138 GK V I P A+ LGI ++ Q +L + L+ +NI +G D+L R+ + Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLPHDTKL------DELARRIS 118 Query: 139 AIFERMRLDMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRI 198 E+ L+++P+ V L+V Q VEI +AL ++LI+DEPT+ L + +LF Sbjct: 119 DTAEQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFET 178 Query: 199 IRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMMVGRALD 258 +R L A+G I+YISHK+DE+R + D +V+R GK + S ++ MM+G Sbjct: 179 LRKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIG---- 234 Query: 259 GEQRTPPDT----SRNEVVLEVRGLNRGR------AIRDVSFQLRRGEILGFAGLMGAGR 308 PP S + +L V+ L+ + + D++F+LR GEILG AG+ G G+ Sbjct: 235 --CEPPPIKHVLRSPGQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQ 292 Query: 309 TEVARAIFGADPLDSGE-IFIHGGKAMIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQAN 367 E+ A+ G DP + I + G + PA G+G++ E+R G M + N Sbjct: 293 QELLAALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADN 352 Query: 368 IALSS-MGRFTRAGFMDQRAMREVAQAYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWL 426 I LS G +GF+ + A+ ++A + + +K AR LSGGN QK ++ + + Sbjct: 353 ILLSHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREV 412 Query: 427 LRDCDILFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCE 486 +R+ +L +PT G+D+GA ++I L AL + G A+++IS EL E+ +S R++V+ + Sbjct: 413 MRNPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAK 472 Query: 487 GRVTGELARADATQENIMQ 505 GR++ +A + AT + I Q Sbjct: 473 GRLSPSIASSAATIDLIGQ 491 Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 14/248 (5%) Query: 18 LIALRNVS--KRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGD- 74 L+A++N+S K P L + FEL AGE+ + G +G G+ L+ LSG R Sbjct: 251 LLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQELLAALSGEDPRAEAQM 310 Query: 75 ILLDGKPVEIGEPRQAQALGIGIIHQEL---NLMNHLSAAQNIFIGREP----RKGFGLI 127 ILL G+ V P Q + G+G + +E + +S A NI + + GF Sbjct: 311 ILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNILLSHQTGATISSGF--- 367 Query: 128 IDEDQLNRQAAAIFERMRLDMD-PRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAA 186 I + + + A + ER + P L+ Q + + + + +VLI+ +PT Sbjct: 368 IRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMRNPKVLIVAQPTWG 427 Query: 187 LNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMD 246 ++ A++ + L+ G ++ IS ++DEL +I+DR+ V+ G+ ++ ++D Sbjct: 428 VDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGRLSPSIASSAATID 487 Query: 247 TIISMMVG 254 I M G Sbjct: 488 LIGQWMSG 495 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 248 bits (633), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 165/517 (31%), Positives = 266/517 (51%), Gaps = 36/517 (6%) Query: 18 LIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 77 ++ + V+KRF L L++ + AGEVH L+GENGAGKSTL ++ GV++ D+G I Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 78 DGKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNRQA 137 DG P A LGI ++HQ +L++++S +N+ +GR I+ +D + R+ Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQA-----ILKQDFIIRRM 117 Query: 138 AAIFERMRLDMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFR 197 + + L +DP VG+L+V +Q +EI K L + R+L++DEPTA L E+ L Sbjct: 118 QELADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLA 177 Query: 198 IIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMMVGRAL 257 + R + G G++ ++HK+ E+ ++ADR SV+R G+ + +V M+G M ++ MVGR + Sbjct: 178 VCRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDV 237 Query: 258 ---------------DGEQRTPPDTSRNEVVLEVRGLN------RGRA---------IRD 287 D Q T V++ R L +G + + D Sbjct: 238 KSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSD 297 Query: 288 VSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIHGGKAMIRQPADAVAHGIG 347 V + RGEI+G AG+ G G++E+ I G G + I D G G Sbjct: 298 VHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITDAGAG 357 Query: 348 YLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYVRQLAIKTPSVEQ 407 + EDR + V N+ L S+ +F+R G +D+ M + A + + ++ S Sbjct: 358 IIPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVRATSPNA 417 Query: 408 QARLLSGGNQQKIVIAKWLLRDCDI-LFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVM 466 LSGGNQQK V+A+ L D I L +PTRG+D+GA ++ + A G +++ Sbjct: 418 PMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNGLGVLL 477 Query: 467 ISSELPEVLRMSHRILVMCEGRVTGELARADATQENI 503 ISS+L E++ +S R+ V+ G + GEL A +E I Sbjct: 478 ISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKI 514 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 30 GVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEIGEPRQ 89 GV L + +A GE+ + G G G+S L I++G+ G + + + + + Sbjct: 291 GVTRLSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQD 350 Query: 90 AQALGIGIIHQE---LNLMNHLSAAQNIFIGR-EPRKGFGLIIDEDQLNRQAAAIFERMR 145 G GII ++ + ++ LS A+N+F+G E FGL+ D +++ +QAA + Sbjct: 351 ITDAGAGIIPEDRHAVACISELSVAENLFLGSLEKFSRFGLL-DREKMAKQAATMMTEFD 409 Query: 146 L-DMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMD-EPTAALNNAEIAELFRIIRDLQ 203 + P P+ L+ QQ +A+ LS D + ++ +PT L+ + +F IR Sbjct: 410 VRATSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAA 469 Query: 204 AQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQGTSMDTIISMMVGR 255 + G+G++ IS ++EL ++DRV+V+ G + +P + + I +MM G Sbjct: 470 SNGLGVLLISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKIGAMMSGH 521 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 12/230 (5%) Query: 18 LIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 77 ++ + VSKRF G+ AL + ++ G+++ L+G NGAGK+T +++G+YQ D+G L Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 78 DGKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKG---FGLIIDEDQLN 134 GKP P + GI Q + L ++A +N+ IGR R FG + Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 135 RQAAAIFER-MRL-------DMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAA 186 R+ A I +R M L RT L+ Q+ +EIA+AL+ D ++L +DEP A Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERT-ARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 187 LNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIA 236 +N E L ++ ++A+G I+ I H + + + DR++V+ GK IA Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 26/249 (10%) Query: 271 EVVLEVRGLNRG----RAIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEI 326 +++L + G+++ +A+ DV+ ++ +G+I G G GAG+T I G D+G Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 327 FIHGGKAMIRQPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTR-------A 379 + G P GI ++ + FG ++ N+ + GR R A Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALE---NVMI---GRHVRTHQGLFGA 117 Query: 380 GFMDQRAMREVAQAYVRQLAIK-------TPSVEQQARLLSGGNQQKIVIAKWLLRDCDI 432 F + A RE +A +RQ A++ E+ AR LS G+Q+++ IA+ L D + Sbjct: 118 VFHHKAARRE--EAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQL 175 Query: 433 LFFDEPTRGIDIGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRVTGE 492 L DEP G++ K + +LL + +GK I++I ++ ++ + RI V+ G+ E Sbjct: 176 LALDEPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAE 235 Query: 493 LARADATQE 501 AD ++ Sbjct: 236 GVPADVQKD 244 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 7/217 (3%) Query: 19 IALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLD 78 I ++N+ K+F +AL+N + AGE+ AL+G +G GK+TL++I++G+ Q D G +LLD Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 79 GKPVEIGEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNRQAA 138 G+ R+ Q +G + Q L H++ +NI G R E Q+ + Sbjct: 63 GEDASARHVRERQ---VGFVFQHYALFKHMTVFENIAFGLRVRPA-ATRPSESQIKEKVT 118 Query: 139 AIFERMRLD-MDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFR 197 + E ++LD + R P +L+ ++Q + +A+AL+ + RVL++DEP AL+ EL R Sbjct: 119 KLLELVQLDWLADRYP-PQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 198 IIRDLQAQ-GVGIVYISHKMDELRQIADRVSVMRDGK 233 +R L V ++++H +E ++AD++ +M G Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGN 214 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 23/214 (10%) Query: 284 AIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFIHGGKAMIRQPADAVA 343 A+ +VS GE+ G G G+T + R I G + D G++ + G A R + Sbjct: 17 ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRE--- 73 Query: 344 HGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYVRQLAIKTP 403 +G++ + H+ L M V NIA G + A +++ +++ K Sbjct: 74 RQVGFVFQ---HYALFKHMTVFENIAF---------GLRVRPAATRPSESQIKEKVTKLL 121 Query: 404 SVEQQARL-------LSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYKLLDA 456 + Q L LSGG +Q+I +A+ L + +L DEP +D + E+ + L Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 457 LAEQGKAI-VMISSELPEVLRMSHRILVMCEGRV 489 L + + ++ + E L ++ +I++M +G V Sbjct: 182 LHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNV 215 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 119/218 (54%), Gaps = 5/218 (2%) Query: 17 PLIALRNVSKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDIL 76 PLIA+ NV K + L + ++ GEV A++G++G+GKSTL++ ++G+ D G I Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 77 LDGKPVEIGEPR-QAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKGFGLIIDEDQLNR 135 + G + E + L +G+I Q+ NL HLS +NI I KG + E Sbjct: 62 VAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKG----VSEKDARA 117 Query: 136 QAAAIFERMRLDMDPRTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAEL 195 A E++ L + +L+ +QQ V IA+ALS + + L+ DE T+AL+ + E+ Sbjct: 118 LAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEV 177 Query: 196 FRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGK 233 ++R L +G+ ++ ++H+M R++ DRV M GK Sbjct: 178 LNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGK 215 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 27/217 (12%) Query: 283 RAIRDVSFQLRRGEILGFAGLMGAGRTEVARAIFGADPLDSGEIFI---HGGKAMIRQPA 339 + ++ + + GE++ G G+G++ + R I G + +D G I + H GK+ + Sbjct: 17 QVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVAGSHLGKSELELRN 76 Query: 340 DAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRAGFMDQRAMREVAQAYVRQLA 399 + G+ + + F L + V NI +S M ++ V++ R LA Sbjct: 77 LRLKVGMIF-----QQFNLFPHLSVGRNIMISPM------------IVKGVSEKDARALA 119 Query: 400 IK-------TPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDIGAKSEIYK 452 +K + + LSGG QQ++ IA+ L + L DE T +D +E+ Sbjct: 120 MKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLN 179 Query: 453 LLDALAEQGKAIVMISSELPEVLRMSHRILVMCEGRV 489 ++ LA +G ++M++ E+ + R++ M +G+V Sbjct: 180 VVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKV 216 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,118,617 Number of extensions: 48063 Number of successful extensions: 469 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 98 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)