BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0841.p (258 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 100 1e-22 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 86 3e-18 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 81 8e-17 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 78 4e-16 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 78 5e-16 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 118/246 (47%), Gaps = 8/246 (3%) Query: 10 VIVTGGASGIGGAISMQLAAEG-AIPVVFARSEPEPQFWSRLTALQPRAAWFQLELQDAA 68 V++TG +GIG A + A EG + V R E + L AL A + +++ A Sbjct: 35 VLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEA 94 Query: 69 RCGEAVAQTVARFGRLDGLVNNAGVNDSVG--LDAGRDEFVASLERNLIHYYV-MAHYCV 125 V QTV RFGR+D VNNAG + ++ + + N++ + + H Sbjct: 95 DVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMR 154 Query: 126 PHLKATRGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNALIPAE 185 L G+I+N+SS G S Y ASK A LT+ A GVRVNA+ P Sbjct: 155 VMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPGP 214 Query: 186 VMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTTGQWVF 245 V T + ++++ E E + IP G R T +E+A VFL S + S+ TGQ + Sbjct: 215 VATEMLDRFVGGSE---ENKAGFLATIPAG-RAATPDEIAQTIVFLASDKVSYLTGQSIA 270 Query: 246 VDGGYT 251 VDGG+T Sbjct: 271 VDGGHT 276 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 120/263 (45%), Gaps = 22/263 (8%) Query: 5 LQEKVVIVTGGASGIGGAISMQLAAEGAIPVVFARSEPEPQFWSRLTALQP--------R 56 L K +VTG SGIG I+ LA +GA V+ + + + LQ + Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDA-----NEIKTLQAALMRNYGVK 60 Query: 57 AAWFQLELQDAARCGEAVAQTVARFGRLDGLVNNAGVNDSVGL-DAGRDEFVASLERNLI 115 ++ A +A +FGR+D LVNNAG+ + + D +++ A + NL Sbjct: 61 CVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLS 120 Query: 116 HYYVMAHYCVPHLKATR-GAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDD 174 + +P ++A G I+N++S L G S Y A+K + LT+ A + Sbjct: 121 SAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHT 180 Query: 175 GVRVNALIPAEVMTPLYEKWIAT------FEHPQEKLDAITSKIPLGKRFTTSEEMADMA 228 G+ NA+ P V+TPL +K + K D ++ K P G+ F T +++ +A Sbjct: 181 GITCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGE-FVTPQQLGALA 239 Query: 229 VFLLSGRSSHTTGQWVFVDGGYT 251 VFL S + G +DGG+T Sbjct: 240 VFLCSEAAVQVRGAAWNMDGGWT 262 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 80.9 bits (198), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 11/249 (4%) Query: 3 LNLQEKVVIVTGGASGIGGAISMQLAAEGAIPVVFARSEPEPQFWSRLTALQPRAAWFQL 62 ++L +V +VTG + GIG AI+ +LA GA + A SE S L L Sbjct: 4 VDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEY--LGNGGKGVVL 61 Query: 63 ELQDAARCGEAVAQTVARFGRLDGLVNNAGVN-DSVGLDAGRDEFVASLERNLIHYYVMA 121 ++ DAAR + + FG + LVNNAG+ D + + +E+ + + NL ++ Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLS 121 Query: 122 HYCV-PHLKATRGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNA 180 + +KA G I+N++S +G Y A+K ++R A + + VN Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 181 LIPAEVMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTT 240 + P + T + + ++++ A+ ++PLG R E++A FL S ++S+ T Sbjct: 182 IAPGFIDTDMTKTL------SEQQIAALLQQVPLG-RLGVPEDIAAAVSFLASPQASYIT 234 Query: 241 GQWVFVDGG 249 G + V+GG Sbjct: 235 GTTLHVNGG 243 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 15/251 (5%) Query: 4 NLQEKVVIVTGGASGIGGAISMQLAAEGAIPVVFARSEPEPQFWSRLTALQPRAAWFQLE 63 +L+ K +I+TG IG A L A GA +V A + ++ A +A +++ Sbjct: 4 SLRNKTIIITGAGGNIGHAYCDGLVAAGA-NIVMADLQ---DLSAQAQAYGQQAIAMKID 59 Query: 64 LQDAARCGEAVAQTVARFGRLDGLVNNAGVNDSVG----LDAGRDEFVASLERNLIHYYV 119 + D A QT A FGR+DG++NNAG +D DE+ E N+ ++ Sbjct: 60 VSDPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVRGVWL 119 Query: 120 MAHYCVPHLKAT-RGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRV 178 P+++ G I+NVSS T G N Y +SK A + LTR A + ++ Sbjct: 120 CCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNIQA 179 Query: 179 NALIPAEVMTPLYEKWIATFEHPQEKLDAITSKIPLGKRFTTSEEMADMAVFLLSGRSSH 238 N L P + P + E+ I + +R T +M A+FLLS S Sbjct: 180 NTLCPD--LIPDADILAKQGSVADER--TIAGRCL--QRSQTPHDMVGAALFLLSDGSDF 233 Query: 239 TTGQWVFVDGG 249 TGQ + V+GG Sbjct: 234 ITGQSLLVNGG 244 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 16/249 (6%) Query: 8 KVVIVTGGASGIGGAISMQLAAEG-AIPVVFARSEPEPQFWSRLTALQPRAAWFQ---LE 63 ++ +VTGG G+G AI ++LAA G + ++ + W +L ++ F + Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKL--MKESGYDFHAYPCD 60 Query: 64 LQDAARCGEAVAQTVARFGRLDGLVNNAGVNDSVGLDA-GRDEFVASLERNLIHYYVMAH 122 + D + VAQ G +D LVNNAG+ + G+ ++ A + NL + M Sbjct: 61 VSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTK 120 Query: 123 -YCVPHLKATRGAILNVSSKTALTGQGNTSGYCASKGAQLSLTREWAAALRDDGVRVNAL 181 C ++ G I+N+SS G + Y A+K T+ A + V VN + Sbjct: 121 PVCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 182 IPAEVMTPLYEKWIATFEHPQEKLDA-ITSKIPLGKRFTTSEEMADMAVFLLSGRSSHTT 240 P + T + PQ+ LD I +IP+G R EE+A + +L S ++ T Sbjct: 181 SPGYIGTKM------VMAIPQDVLDTKIVPQIPMG-RLGKPEEIAGLVAYLASDEAAFLT 233 Query: 241 GQWVFVDGG 249 G + ++GG Sbjct: 234 GANIAINGG 242 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 574,693 Number of extensions: 22083 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 20 Length of query: 258 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 177 Effective length of database: 921,564 Effective search space: 163116828 Effective search space used: 163116828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)