BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0840.p
         (425 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate lac...    79   7e-16
gi|152981406|ref|YP_001354765.1| mandelate racemase [Janthinobac...    62   6e-11

>gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate
           lactonizing enzyme family protein [Janthinobacterium sp.
           Marseille]
          Length = 388

 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 133/319 (41%), Gaps = 57/319 (17%)

Query: 106 GAIHLATGAVVNAAWDLWAKAQGKPVWKLVADMSPEELVRTIDFRYITDCITPEEALALL 165
           G   +A G +  A WD  AK +GKP+++L+AD            RY              
Sbjct: 105 GERSVAIGTIDMAVWDAVAKIEGKPLFQLLAD------------RYGN------------ 140

Query: 166 REKEAGKAERLRILEQEGYPCYTTSAGWLGYDDAKLRRLCQQAIDQGFNHVKLKVG-RDL 224
                G+A+R   +   G   Y       G D  KL+   +  ID+G+  VK K+G   L
Sbjct: 141 -----GQADRKIFVYAAGGYYYP------GQDHGKLKDEMRSYIDRGYTVVKKKIGGASL 189

Query: 225 EDDKRRVRIAREVLGPDRSLMIDANQVWEVDQAIAWVNELAFAQPWFIEEPTCPDDVEGH 284
           ++D RR+     VLG  + L +DAN  +++D A+ +   L+    ++ EE   P D E  
Sbjct: 190 DEDLRRIDSILSVLGDGQKLAVDANGRFDLDTAVKYAKALSQYDLFWYEEAGDPLDFELQ 249

Query: 285 RKIRAGIGAVKVATGE----MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMA 340
             +R+      +ATGE    M   R L +   MR   D +Q D     G+ E L  + M 
Sbjct: 250 ATLRSYYDK-PMATGENLFSMQDARNLIRYGGMRPDRDWLQFDCALSYGLVEYLRTLDML 308

Query: 341 AKYG---KVVCPHAGGVGLCEYVQHLSMIDYLCISGSKEGRVTEYVDHLHEH--FVDPCV 395
            ++G   K   PH G      +   L++   L + G++      Y D    +  F D   
Sbjct: 309 HEHGWSRKRCIPHGG------HQMSLNIAAGLGLGGNE-----SYPDLFQPYGGFPDGVK 357

Query: 396 IRNAAYMPPSLPGFSIEMK 414
           ++N     P LPG   E K
Sbjct: 358 VQNGYITLPDLPGIGFEGK 376


>gi|152981406|ref|YP_001354765.1| mandelate racemase
           [Janthinobacterium sp. Marseille]
          Length = 365

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 16/241 (6%)

Query: 182 EGYPCYTTSAGWLGYDDAKLRRLCQQAIDQGFNHVKLKVGR-DLEDDKRRVRIAREVLGP 240
           +G P Y  S G  G  DA+  +    A+++GF  +K+K+G   L++D   VR A +    
Sbjct: 138 DGIPAYA-SFGMDGLADAE--KHVAAAVERGFKAIKIKIGYPTLQEDIAVVRAAIKATEG 194

Query: 241 DRSLMIDANQVWEVDQAIAWVNELAFAQPWFIEEPTCPDDVEGHRKIRAGIGAVKVATGE 300
              LM+D NQ  +V +A+     L      +IEEPT  DD  GH +I A I    +  GE
Sbjct: 195 VARLMVDYNQSLDVAEAMVRCPALDDEGLLWIEEPTRYDDNCGHAQIAAAI-KTPLQLGE 253

Query: 301 MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKYGKVVCPHAGGVGLCEYV 360
                    + +   A D +  D  ++GGV+  +  + + A     V  H        + 
Sbjct: 254 NLWGPRQVAESLRMKASDYMMPDLMKIGGVSGWMQAVGVCAANNVRVSNH--------FF 305

Query: 361 QHLSMIDYLCISGSKEGRVTEYVDHLHEHFVDPCVIRNAAYMPPSLPGFSIEMKPASLEQ 420
           Q +S+     +  +      EY        VDP ++RN   +    PG  I+ K  ++E+
Sbjct: 306 QEISV---HLLRVTPTAHYIEYFQMADPILVDPLLVRNGNAIVRDCPGNGIQWKEEAVER 362

Query: 421 Y 421
           Y
Sbjct: 363 Y 363


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,011,919
Number of extensions: 41396
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 339
Effective length of database: 903,079
Effective search space: 306143781
Effective search space used: 306143781
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)