BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0837.p (354 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Ma... 104 1e-23 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 86 3e-18 gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 84 2e-17 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 80 2e-16 gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Ma... 70 1e-13 >gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Marseille] Length = 395 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 109/367 (29%), Positives = 158/367 (43%), Gaps = 51/367 (13%) Query: 11 QSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASN-QWGTSMIGFKGTEDLGGGTNA 69 QS++ IYG + AG+ +TN KN G ++ SN ++ + IG KGTEDLGGG NA Sbjct: 57 QSTINIYGTIDAGIRNVTNTTKNGGD-----TLKMGSNGEYYNNRIGIKGTEDLGGGLNA 111 Query: 70 FFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKNLFINNDVWF-LDP 128 F LE+GF + TG L D N FNR S VG++ + G++ G+ ++ F DP Sbjct: 112 HFHLETGFNTGTGAL---DNNAGRFFNRISSVGVAGS-FGSIDFGRMPSVSCKTIFAYDP 167 Query: 129 TGQQWIGTANLVRGR------NWPG----------ASNVIEYTTPTYGGFGATLQTSLGE 172 +++ L N PG SN ++Y + + S GE Sbjct: 168 FQYRYVQIVPLAGASAGNADGNAPGFPWGTIGGTRFSNDVQYIG-KFDNVTILAEFSTGE 226 Query: 173 AAGSFSKGGTSTKYGRKDGLSLVYQNNGLELRGIYDVVRDPNGRYTDV--YDTSKELILG 230 +GS S G + + Y+ + Y + PN T Y ++ G Sbjct: 227 VSGSNSS-------GSAQAVGMTYRPGPFVIGAAY-TRQKPNVSITATPEYQQQNQVTFG 278 Query: 231 GTYKIDKLKLFLGYENLRAPDVNPASGAPDRVNHYWLGANYDVTSQLQLVGSVFHVNANN 290 G Y+ D L++ GY N A G ++ + W+GA+YD T + + + Sbjct: 279 GAYQADGLRIAGGYINTEADTA--VQGINNQAKNSWIGASYDFTPAVSVTTGFYRTTLAT 336 Query: 291 GN---GSANLFMAGVNYFLSKRTLLYVGAGTMRNGNNANYSLEADSSTGGGKGTNQTGGY 347 GN S NL + G Y LS RT LY+G +L S G T QTG Sbjct: 337 GNVEKASRNLLIVGATYALSTRTNLYLGVDRA--------TLGGFVSLTAGAKTRQTGTS 388 Query: 348 FGIAHSF 354 GI H F Sbjct: 389 IGINHMF 395 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 113/352 (32%), Positives = 155/352 (44%), Gaps = 53/352 (15%) Query: 11 QSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASNQWGTSMIGFKGTEDLGGGTNAF 70 QSSVT+YG V G+ I +N G+GT T I S NQ S +GFKGTEDLG G A Sbjct: 21 QSSVTVYGVVDLGLKI-----ENAGNGTV-TGIDSG-NQ-SVSRVGFKGTEDLGNGLKAN 72 Query: 71 FLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGK---NLFINNDVWFLD 127 F+LE+GF + + G+ + T FNR+SYV L+ G +KLG+ +F N+ V+ D Sbjct: 73 FVLEAGFNADS----GSQSDATRFFNRQSYVSLAGG-FGEVKLGRVQTMVFTNSAVF--D 125 Query: 128 PTGQQWIGTANLVRGRNWPG--ASNVIEYTTPTYGGFGATLQTSLGEAAGSFSKGGTSTK 185 P G + VR N+ G N + Y+ G S GE AG +T Sbjct: 126 PFADTLAGDS--VRIFNYGGNRIDNTVNYSFAAKNGINGQAAYSFGEVAG-------NTS 176 Query: 186 YGRKDGLSLVYQNNGLELRGIYDVVRDPNGRYTDVYDTSKELILGGTYKIDKLKLFLGYE 245 R ++ Y + L Y +D G D++K ++GG Y L+ F+ Y Sbjct: 177 ASRTVAGAIGYASGPLATVLTYQDTKDVTGN-----DSAKTTLIGGNYNFGLLQPFIAYA 231 Query: 246 NLRAPDVNPASGAPDRVNHYWLGANYDVTSQLQLVGSVFHV-NANNGNGSANLFMAGVNY 304 VN G D LG ++TS ++ S + N A G + Sbjct: 232 ------VNKGFGTLD-TRDALLGLKINLTSADTIMTSYMQKRDKVIDNADAKQIAIGYTH 284 Query: 305 FLSKRTLLYVGAGTMRNGNNANYSLEADSSTGGGKGTNQTGGYF--GIAHSF 354 LS RT LY + N +NA Y + T GK T F GI H F Sbjct: 285 NLSVRTNLYTSWARLSNDDNAAYRV-----TSAGK----TDKLFNIGIRHKF 327 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 156/379 (41%), Gaps = 50/379 (13%) Query: 1 MGAFSAQAQAQSSVTIYGRVVAGVDIMTNVPKNDGSGTTGTRIRSASNQWGTSMIGFKGT 60 +GAF+ A AQSSVT+YG V G + D G++ S S IGFKGT Sbjct: 11 LGAFAGAASAQSSVTVYGIVDLGFAHV------DDGNPAGSKNGIDSGGQSASRIGFKGT 64 Query: 61 EDLGGGTNAFFLLESGF-----------GSTTGGLNGTDVNGTSLFNRRSYVGLSSANAG 109 EDLG G A F LE+ + G N N FNR + VGL SA G Sbjct: 65 EDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFATVGLQSAAFG 124 Query: 110 TLKLGKNLFINNDVW-FLDPTGQ----QWIGTA--NLVRGRNWPGASNVIEYTTPTYGGF 162 T+ LG+ + D + +DP G I T N V ++ SN +Y + ++GGF Sbjct: 125 TVLLGRQTSVIKDAYDQIDPFGDGGTVGAISTVFFNGVLAGDYGRISNSAKYQSNSFGGF 184 Query: 163 GATLQTSLGEAAGSFSKGGTSTKYGRKDGLSLVYQNNGLELRGIY-----DVVRDPNGRY 217 GE G G ++ Y GL L Y N L ++ Y V +P+ + Sbjct: 185 KFGAAYGFGETPGD---TGANSNY----GLGLGYANGPLNVQFAYHNQDRSTVANPSVQQ 237 Query: 218 TDVYDTSKELILGGTYKIDKLKLFLGYENLRAPDVNPASGAPDRVNHYWLGANYDVTSQL 277 + K ++LG TY +KL Y + + N + + +Y LG + V Sbjct: 238 AE----GKLMLLGATYDFGVVKLHGAYGDTKLE--NSVANTEVKYRNYMLGVSAPVGPGT 291 Query: 278 QLVGSVFHVNANNGNGSANLFMAGVNYFLSKRTLLYVGAGTMRNGNNANYSLEADSSTGG 337 + N + N A F +Y LSKRT LY G N + + L A + G Sbjct: 292 IFASYTANDNRSVDNADAKKFAISYSYDLSKRTNLYTGYSKTSNDDGSRIGLNAGAPVG- 350 Query: 338 GKGTNQTGGYF--GIAHSF 354 ++ F GI H F Sbjct: 351 -----ESASIFNVGIRHKF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 41/265 (15%) Query: 1 MGAFSAQAQAQSSVTIYGRVVAGVDIMTNVPKNDG-SGTTGTRIRSASNQWGTSMIGFKG 59 M A +QAQSSV +YG + D+ K G +G TG + + TS +G KG Sbjct: 14 MLACGTASQAQSSVQVYGLI----DVALAYDKQPGKAGVTGVE----NGKMTTSYLGLKG 65 Query: 60 TEDLGGGTNAFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKLGKN--- 116 +EDLGGG + F LES F + TG NG +G + R SYVGL G+++LG+N Sbjct: 66 SEDLGGGLSTIFALESYFRADTGS-NGR-FDGDGFWTRSSYVGL-QGRFGSVRLGRNSVP 122 Query: 117 LFINN-------DVWFLDPTGQQWIGTANLVRGRNWPGASNVIEYTTPTYGGFGATLQTS 169 LFI+ D + P+ + + + + W S+ I Y +P + G L + Sbjct: 123 LFISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGW---SDSIAYVSPNFSGLTVNLIAA 179 Query: 170 LGEAAGSFSKGGTSTKYGRKDGLSLVYQNNGLELRGIYDVVRDPNGRYTDVYDTSKELIL 229 GE G + GG S++Y L L +Y VR + + DT+ L Sbjct: 180 AGEGNGGPNVGG-----------SVLYTKGPLGLTAVYQRVR----KGAAIADTT-TWQL 223 Query: 230 GGTYKIDKLKLFLGYENLRAPDVNP 254 G +Y D +K+F Y ++ P Sbjct: 224 GSSYDFDVVKVFAQYGQVKNVSAQP 248 >gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Marseille] Length = 413 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 157/410 (38%), Gaps = 84/410 (20%) Query: 9 QAQSSVTIYGRV-------------VAGVDIMTNVPKNDGS--GTTGTRIRSASNQWGTS 53 QA+ SVT+YG++ AG + T V + +GT + S++ S Sbjct: 24 QAEPSVTVYGKLYPQITNYSLSRGTAAGTSVSTLVSPVTATPQSLSGTVVESSN-----S 78 Query: 54 MIGFKGTEDLGGGTNAFFLLESGFGSTTGGLNGTDVNGTSLFNRRSYVGLSSANAGTLKL 113 IGF+G+E +G G A F LE+ G TG + D+ F+R ++VGL G +K+ Sbjct: 79 YIGFRGSEKIGDGLTAMFQLEASIGIDTGAQSSPDI----FFSRETFVGL-EGGLGEIKM 133 Query: 114 GKNLFINNDVWFLDPTGQQWIGTANLVRGRN---------------WPGASNVIEYTTPT 158 GK + + D + + N V G N +N + YTTP Sbjct: 134 GKLDTVYKSLG--DTLSFGGVSSGNFVSGSNIMSKNGFGTNSAHRFHERPANTVMYTTPE 191 Query: 159 YGGFGATLQTSLGEAAGSFSKG-----GTSTKYG---------RKDGLSLVYQNNGLELR 204 GF L S GE S+G G + K G + + +N LR Sbjct: 192 VSGFQGLLGYSFGEIPDDRSRGNIISAGITYKAGPWYVALANEQHENFYGASRNLPAALR 251 Query: 205 GI-----YDVVRDPNGRYTDVYDTSKELILGGTYKIDKLKLFLGYENLRAPDVNPASGAP 259 I +R P +SK+ T + NL + + GA Sbjct: 252 NITGGTGAGFIRVPG-------TSSKDTATRATAQYQFTSNTRAELNLVRMKLAESGGAV 304 Query: 260 DRVNHY----WLGANYDVTSQLQLVGSVFHV-----------NANNGNGSANLFMAGVNY 304 R Y WL + +VGS N N +A++ GV Y Sbjct: 305 GRFKSYTHNAWLLTAEHKMNAWAVVGSYGQASAGECELVGAGNCNTDGLNASMLSMGVFY 364 Query: 305 FLSKRTLLYVGAGTMRNGNNANYSLEADSSTGGGKGTNQTGGYFGIAHSF 354 LSKRT LY MRNG++ANYS D+ G G N T GI+H F Sbjct: 365 TLSKRTQLYSLFSRMRNGHSANYSNAGDAQP-PGVGQNLTQLALGISHRF 413 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 891,855 Number of extensions: 43951 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 9 Length of query: 354 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 270 Effective length of database: 910,473 Effective search space: 245827710 Effective search space used: 245827710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)