BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0836.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 87 2e-18 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 80 2e-16 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 73 2e-14 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 72 3e-14 gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ... 71 7e-14 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 137/299 (45%), Gaps = 17/299 (5%) Query: 14 LKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPRGMRPTIY 73 ++ R L +A +++ RA+ L++TQP S Q+K +ED LG+ LF+R+ R ++ T Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 74 GEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARVKEQAPML 133 GE +A+ AL + + + L++ G+V GV+ S G LPP +A + P + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 134 RIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCAVARVGHPFHTR 193 +I V S + RLL G+L F G + + E L P+ V HP Sbjct: 121 KITVLRLRSGEIEERLLDGDLHF--GVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGS 178 Query: 194 TDLTLSDLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQTDFI 253 +TL++L +M R D + G+ P V++ AI I + ++ + Sbjct: 179 AGITLNELNEHELVMLSDEYNSRKMMDAILLANGIT-PRIVMEMNAIEPILATVRHSSLA 237 Query: 254 YAMPTEVARYYTQARLMDILP----IDL-PCRMAGFGIITRQDSLLSPGANLVLQAIRE 307 + A L+D +P + L P G+ TR++S LS A ++ IR+ Sbjct: 238 TIL---------SANLVDEMPGLHQVPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQ 287 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 3/217 (1%) Query: 17 RQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPRGMRPTIYGEA 76 R L + + + ++ +AA + + QP S+Q++ LE LGV+LF R+PRGM T G+A Sbjct: 7 RLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESGQA 66 Query: 77 MIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARV-KEQAPMLRI 135 ++ AR+ L ++ E + + G SG++ VG S + PA+ R ++++P + + Sbjct: 67 LLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGVIM 126 Query: 136 GVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCAVARVGHPFHTRTD 195 VE ++N L+ L H LD R A G + L +E + A+ R Sbjct: 127 AVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQRRKS 186 Query: 196 LTLSDLASEAWIMA--PKGSILRARCDQMFREQGLAP 230 L L+ LA + +I+ P G L R G +P Sbjct: 187 LPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSP 223 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 6/211 (2%) Query: 18 QLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPRGMRPTIYGEAM 77 +L ++A+ ++ AA + QP S +K LED LGV+LFER + T G + Sbjct: 21 ELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGAQI 80 Query: 78 IRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARVKEQAPMLRIGV 137 + A L + E K L G +G+I + LLPP + + E+ P + + + Sbjct: 81 VAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQMPLVL 140 Query: 138 EVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCAVARVGHPFHTRTDLT 197 + + LL L GELD I + + GLL + + DEP H + R ++ Sbjct: 141 QENFTVKLLELLRQGELDAAIVALPFPDQ--GLLVQPVYDEPFVVAVPKHHKWANRDSVS 198 Query: 198 LSDLASEAWIMAPKGSILRAR----CDQMFR 224 DL SE ++ G R + C +M R Sbjct: 199 TDDLKSETMLLLGNGHCFRDQVLEVCPEMSR 229 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 3/197 (1%) Query: 17 RQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPRGMRPTIYGEA 76 RQL + + + RAA EL++TQPA S Q+K LE+ G++LFE+L + + T G Sbjct: 7 RQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGSE 66 Query: 77 MIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARVKEQAPMLRIG 136 ++ ++R + +A + + K G+++V VI S G P + + + Sbjct: 67 LLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFPRLLVEFARSHQGVTLN 125 Query: 137 VEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCAVARVGHPFHTRTDL 196 + V + LL+++ D I ++ + E A P VA HP ++ ++ Sbjct: 126 LSVHNREGLLNQMTSNLTDIAI--MVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKNI 183 Query: 197 TLSDLASEAWIMAPKGS 213 +S L E +++ KGS Sbjct: 184 PMSRLMQEPFVVREKGS 200 >gi|152982762|ref|YP_001353011.1| transcriptional activator MetR [Janthinobacterium sp. Marseille] Length = 306 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 22/169 (13%) Query: 14 LKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVSLFERLPRGMRPTIY 73 L+ R L L+AL + N+ RAA+ LN+TQ A S Q+K LED G LFER +R T Sbjct: 5 LELRHLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKSTPVRFTPA 64 Query: 74 GEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGMALLPPAIARVKEQAPML 133 GE +++ A L +++ D+V L G++GQ+ + V L PA+ Sbjct: 65 GERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAM---------- 114 Query: 134 RIGVEVESSNILLSRLLHGELDFIIGRILDEEARGGLLYEELADEPVCA 182 ++ R ELD + G D GLLYE AD + A Sbjct: 115 ---------DVFRGRWPEVELDIVSGFQADP---VGLLYEHRADVAIVA 151 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 683,127 Number of extensions: 27103 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 16 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)