BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0834.p (261 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 113 2e-26 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 100 2e-22 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 99 2e-22 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 95 4e-21 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 94 1e-20 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 27/267 (10%) Query: 1 MSNTPHDVQLASFPSLKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFVDIAT-EASEALC 59 MSNT L GK F+ GG GIGAAIV+ A+ GA VAF +++ + ++A+ Sbjct: 1 MSNTNQ---------LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVA 51 Query: 60 NEVAAAGHPKPLFRHCDLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEY 119 E+ AAG + L H D D A Q I G D+LVNNA +E+ LE Sbjct: 52 QEIEAAGG-RALAIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLED 110 Query: 120 WNDRIAINQRPSFFAVQSVVEGMKRRGGGSIINFSSISWHQ---SGGGFPVYTTAKASTL 176 ++ +A+N R F A Q M GG II S + + +GG VY +KA+ + Sbjct: 111 FDRTVAVNVRSVFVATQEAARHMGE--GGRIITIGSTNADRMPFAGG--AVYAMSKAAIV 166 Query: 177 GLTRGLARDLGPHKIRVNTVTPGWV---MTERQIKLWLDEEGKKSIARNQCLQGDLLPWH 233 GLT+GLARDLGP I VN V PG V M +G +I R + Sbjct: 167 GLTKGLARDLGPRGITVNNVQPGPVDTDMNPANSDFADTLKGLMAIGRYGKDE------E 220 Query: 234 LARMVLFLAADDSAMCTAQEFIVDAGW 260 +A V +LA ++ T +D G+ Sbjct: 221 IASFVAYLAGPEAGYITGASLTIDGGF 247 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 23/262 (8%) Query: 16 LKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFV------DIATEASEALCNE-VAAAGHP 68 L GK +TG +GIG I +A AQQGA + +I T + + N V HP Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVKCVHHP 65 Query: 69 KPLFRHCDLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQ 128 + + ++ + AF A Q G D+LVNNA +E+ +E W+ IAIN Sbjct: 66 ADMSKPAEIEAMMAFAAQ------QFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINL 119 Query: 129 RPSFFAVQSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGP 188 +F + + M+ + G IIN +S+ Y AK +GLT+ A ++ Sbjct: 120 SSAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAH 179 Query: 189 HKIRVNTVTPGWVMT---ERQIKL------WLDEEGKKSIARNQCLQGDLL-PWHLARMV 238 I N + PGWV+T ++Q+ DE KK + + G+ + P L + Sbjct: 180 TGITCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALA 239 Query: 239 LFLAADDSAMCTAQEFIVDAGW 260 +FL ++ + + +D GW Sbjct: 240 VFLCSEAAVQVRGAAWNMDGGW 261 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 11/243 (4%) Query: 22 FITGGGTGIGAAIVEAFAQQGAHV--AFVDIATEASE--ALCNEVAAAGHPKPLFRHCDL 77 +TGG G+G AI A G V + +A E L E H P CD+ Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYP----CDV 61 Query: 78 RDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAVQS 137 D + Q +A+++ ++G DVLVNNA + +++ W+ +A N F + Sbjct: 62 SDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKP 121 Query: 138 VVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNTVT 197 V +GM RG G IIN SS++ + G Y+ AKA G T+ LA ++ + VNT++ Sbjct: 122 VCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 198 PGWVMTERQIKLWLDEEGKKSIARNQCLQGDL-LPWHLARMVLFLAADDSAMCTAQEFIV 256 PG++ T+ + + D K + Q G L P +A +V +LA+D++A T + Sbjct: 182 PGYIGTKMVMAIPQDVLDTKIVP--QIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAI 239 Query: 257 DAG 259 + G Sbjct: 240 NGG 242 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 10/248 (4%) Query: 15 SLKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFVDIATEASEALCNEVAAAGHPKPLFRH 74 SL+ K + ITG G IG A + GA++ D+ +++A A Sbjct: 4 SLRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADLQDLSAQAQAYGQQAI------AMK 57 Query: 75 CDLRDIPAFQATIAELQGQLGDFDVLVNNAA---NDQRHKLEEVTLEYWNDRIAINQRPS 131 D+ D + + + G D ++NNA ++ ++ W+ IN R Sbjct: 58 IDVSDPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVRGV 117 Query: 132 FFAVQSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKI 191 + ++V M+ +G G IIN SS + ++ F Y ++KA+ +GLTR LAR++G H I Sbjct: 118 WLCCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNI 177 Query: 192 RVNTVTPGWVMTERQIKLWLDEEGKKSIARNQCLQGDLLPWHLARMVLFLAADDSAMCTA 251 + NT+ P + + +++IA +CLQ P + LFL +D S T Sbjct: 178 QANTLCPDLIPDADILAKQGSVADERTIA-GRCLQRSQTPHDMVGAALFLLSDGSDFITG 236 Query: 252 QEFIVDAG 259 Q +V+ G Sbjct: 237 QSLLVNGG 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 110/253 (43%), Gaps = 22/253 (8%) Query: 16 LKGKRVFITGGGTGIGAAIVEAFAQQGAHVAFVDIATEASEALCNEVAAAGHPKPLFRHC 75 L G+ +TG GIG AI + A+ GA V + + A+ + G L Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVL---- 61 Query: 76 DLRDIPAFQATIAELQGQLGDFDVLVNNAANDQRHKLEEVTLEYWNDRIAINQRPSFFAV 135 D+ D A I E+Q + G +LVNNA Q + E W+ IA N Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLS 121 Query: 136 QSVVEGMKRRGGGSIINFSSISWHQSGGGFPVYTTAKASTLGLTRGLARDLGPHKIRVNT 195 ++V+ GM + G IIN +S+ G Y AKA G++R LAR++G I VN Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 196 VTPGWV-------MTERQIKLWLDEEGKKSIARNQCLQGDL-LPWHLARMVLFLAADDSA 247 + PG++ ++E+QI L Q G L +P +A V FLA+ ++ Sbjct: 182 IAPGFIDTDMTKTLSEQQIAALLQ----------QVPLGRLGVPEDIAAAVSFLASPQAS 231 Query: 248 MCTAQEFIVDAGW 260 T V+ G Sbjct: 232 YITGTTLHVNGGM 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 526,592 Number of extensions: 18566 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 17 Length of query: 261 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 180 Effective length of database: 921,564 Effective search space: 165881520 Effective search space used: 165881520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)