BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0827.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 231 7e-62 gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 214 8e-57 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 117 2e-27 gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP... 110 2e-25 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 110 3e-25 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 231 bits (590), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 167/503 (33%), Positives = 262/503 (52%), Gaps = 36/503 (7%) Query: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIEL 71 +LE++G+ K F L D+ L + GEVH L+G+NGAGKSTL ++ GVH PD G I+ Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 72 DGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQSKQ 131 DG P+ A LGI+ V+Q +L N+SV EN+ +GR + + D+ + + ++ Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGR-AQAILKQDF--IIRRMQE 119 Query: 132 LLQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVL 191 L + + ID + + +Q + I + L + ++L+LDEPT+ L EV L V Sbjct: 120 LADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAVC 179 Query: 192 RRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLD-LVNKMVGVTAV 250 R++ E G ++ VTH L + +++DR +VLR G R E + E + + LV MVG Sbjct: 180 RKVAESGRGVILVTHKLAEIAKVADRTSVLRQG-RIVESVCMEGADMHALVRSMVG---- 234 Query: 251 DHRKVEAGAEALAAELS-------------------TDETGTGEVFLQADGFG---RRGV 288 R V++G LAA L D G LQ G + GV Sbjct: 235 --RDVKSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGV 292 Query: 289 LAPQDLELR--RGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNVPRDAI 346 D+ L RGE+ G+ G+ G+G++E+ ++ G G ++I + + + +D Sbjct: 293 TRLSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDIT 352 Query: 347 AAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKT 406 AG G EDR I ELSV EN+ L + F +L R++ + AA + ++ Sbjct: 353 DAGAGIIPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVRA 412 Query: 407 ADLETPIGLLSGGNQQKALLARWLATDPGMLIL-DEPTRGIDVRAKQEIMDFVIAMCRKG 465 P+ LSGGNQQKA+LAR L+ DP + +L +PTRG+DV A + + + + G Sbjct: 413 TSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNG 472 Query: 466 MSILFISSEIPEVLRCSDRMLVL 488 + +L ISS++ E++ SDR+ VL Sbjct: 473 LGVLLISSDLNELIAVSDRVAVL 495 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 214 bits (546), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 252/485 (51%), Gaps = 20/485 (4%) Query: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIELD 72 LEL I K + V A + L + PGE+H ++G+NGAGKSTL+K++ G +PD GK+ + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQSKQL 132 G+ + A+ A+ LGI+ V+Q +L L+V ENI +G P ++D + + Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALG-LPHDT-KLD--ELARRISDT 120 Query: 133 LQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLR 192 +Q ++++ + + + Q V I RAL ++LILDEPTS L V++LF+ LR Sbjct: 121 AEQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLR 180 Query: 193 RLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLDLVNKMVGV--TAV 250 +L +G +IL+++H LD+ + D TV+R G G E S L M+G + Sbjct: 181 KLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIGCEPPPI 240 Query: 251 DHRKVEAGAEALAAE-LSTDETGTGEVFLQADGFGRRGVLAPQDLELRRGEVFGLCGLLG 309 H G LA + LS + L F ELR GE+ G+ G+ G Sbjct: 241 KHVLRSPGQTLLAVKNLSLKKNHPFATELSDINF-----------ELRAGEILGIAGVSG 289 Query: 310 SGRTEMARLLFGAD-RADCGQLRIEGRSVKLNVPRDAIAAGIGFCSEDRKKEGAILELSV 368 +G+ E+ L G D RA+ + ++G V P G+GF E+R GA+ ++S+ Sbjct: 290 NGQQELLAALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSL 349 Query: 369 RENIILALQARQGLFRVLPRKRQ-NQIAADYVKWLGIKTADLETPIGLLSGGNQQKALLA 427 +NI+L+ Q + RK ++A D ++ +K LSGGN QK ++ Sbjct: 350 ADNILLSHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVG 409 Query: 428 RWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEVLRCSDRMLV 487 R + +P +LI+ +PT G+DV A +I ++A+ G ++L IS E+ E+ SDR++V Sbjct: 410 REVMRNPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMV 469 Query: 488 LRDRR 492 + R Sbjct: 470 IAKGR 474 Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 293 DLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNVPRDAIAAGIGF 352 +L ++ GE+ + G G+G++ + ++++G+ + D G++ G+ V + P A GI Sbjct: 24 NLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWNGKEVHIANPAMARELGIAM 83 Query: 353 CSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETP 412 + L+V ENI L L L + R +D + G++ + + Sbjct: 84 VFQHFS---LFDTLTVVENIALGLPHDTKLDELARR------ISDTAEQYGLEL-EPQRH 133 Query: 413 IGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFIS 472 + LS G Q+ + R L P +LILDEPT + +A +++ + + + +G SIL+IS Sbjct: 134 VHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRKLAAEGCSILYIS 193 Query: 473 SEIPEVLRCSDRMLVLRDRRACG 495 ++ E+ D V+R + G Sbjct: 194 HKLDEIRALCDTCTVVRAGKNTG 216 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 12/225 (5%) Query: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIEL 71 +L ++G+ K F G++AL+DV +++ G+++ L+G NGAGK+T V+TG+++ D G EL Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 72 DGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPRR----FGRI-DWKSVH 126 G+ +P++ + GI+ +Q + L ++ EN+ +GR+ R FG + K+ Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 127 AQSKQLLQQLQ-----IDIDVGAQLSSYPLAI--QQMVAISRALSVSAKVLILDEPTSSL 179 + ++ Q+ + I A+ ++ L+ Q+ + I+RAL+ ++L LDEP + + Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 185 Query: 180 DEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 + E L ++L +++ +G IL + H + + DRITVL G Sbjct: 186 NATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYG 230 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 113/216 (52%), Gaps = 14/216 (6%) Query: 283 FGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVKLNVP 342 FG L+ ++++ +G+++GL G G+G+T ++ G +AD G + G+ + P Sbjct: 16 FGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELAGKPYSPSAP 75 Query: 343 RDAIAAGIGFCSEDRKKEGAILELSVRENIILALQAR--QGLFRVL-----PRKRQNQI- 394 AGI ++ + G E++ EN+++ R QGLF + R+ + +I Sbjct: 76 HKVAKAGIARTFQNIRLFG---EMTALENVMIGRHVRTHQGLFGAVFHHKAARREEAEIR 132 Query: 395 --AADYVKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQ 452 A + ++++GI E LS G+Q++ +AR LATDP +L LDEP G++ K Sbjct: 133 QRAMELLEFVGIAKF-AERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKL 191 Query: 453 EIMDFVIAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 + + ++ + +G +IL I ++ ++ DR+ VL Sbjct: 192 GLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVL 227 >gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 310 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 16/239 (6%) Query: 12 MLELSGIHKAF----AGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQG 67 +L ++ +HK+F +G K + + L GE + L+G NGAGK+T +++ G+ PD G Sbjct: 6 ILAVADLHKSFGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSG 65 Query: 68 KIELDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFV-GRYPRRFGRIDWKSVH 126 I L AI PA EA+A + V Q NL P+ +V EN+ V GRY FG D K++ Sbjct: 66 SITLVDHAI-PAHAREARAR-VGVVPQGDNLDPDFTVEENLLVFGRY---FGIPD-KTIQ 119 Query: 127 AQSKQLLQQLQIDIDVGAQLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQ 186 A+ LL+ + AQ+ +++ + ++RAL ++ +DEPT+ LD Sbjct: 120 ARIPSLLEFANLTNKKDAQIGELSGGMRRRLTLARALVNDPDLIFMDEPTTGLDPQARHM 179 Query: 187 LFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLDLVNKMV 245 +++ L+ L +G I THF+D+ + DR+ V+ G L++E S +L+ + + Sbjct: 180 IWERLKALLARGKTIFLTTHFMDEAERLCDRLAVMDYG-----KLIAEGSPRELIAQHI 233 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 15/210 (7%) Query: 283 FGRRG----VLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSVK 338 FGR G V+ LRRGE +GL G G+G+T RL G D G + + ++ Sbjct: 16 FGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSGSITLVDHAIP 75 Query: 339 LNVPRDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADY 398 + R+A A +G + + + +V EN+++ G + +P K Sbjct: 76 AHA-REA-RARVGVVPQGDNLDP---DFTVEENLLVF-----GRYFGIPDKTIQARIPSL 125 Query: 399 VKWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFV 458 +++ + T + IG LSGG +++ LAR L DP ++ +DEPT G+D +A+ I + + Sbjct: 126 LEFANL-TNKKDAQIGELSGGMRRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERL 184 Query: 459 IAMCRKGMSILFISSEIPEVLRCSDRMLVL 488 A+ +G +I + + E R DR+ V+ Sbjct: 185 KALLARGKTIFLTTHFMDEAERLCDRLAVM 214 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 13/220 (5%) Query: 11 PMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDQGKIE 70 P++ + + K++ + L + + + PGEV ++G++G+GKSTL++ + G+ D+G I Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 71 LDGRAIAPASTLEAQAL--GISTVYQEVNLCPNLSVAENIFVGRYPRRFGRIDWKSVHAQ 128 + G + S LE + L + ++Q+ NL P+LSV NI + P + K A Sbjct: 62 VAGSHLG-KSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMIS--PMIVKGVSEKDARAL 118 Query: 129 SKQLLQQLQIDIDVGAQLSSYPLAI----QQMVAISRALSVSAKVLILDEPTSSLDEAEV 184 + + L++ + + + S+P + QQ VAI+RALS+ + L+ DE TS+LD V Sbjct: 119 AMKNLEK----VGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELV 174 Query: 185 QQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNG 224 ++ V+R L +GM ++ VTH + E+ DR+ + G Sbjct: 175 NEVLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQG 214 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 13/210 (6%) Query: 283 FGRRGVLAPQDLELRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGRSV---KL 339 +G VL +++ GEV + G GSG++ + R + G + D G + + G + +L Sbjct: 13 YGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVAGSHLGKSEL 72 Query: 340 NVPRDAIAAGIGFCSEDRKKEGAILELSVRENIILALQARQGLFRVLPRKRQNQIAADYV 399 + + G+ F ++ LSV NI+++ +G+ K +A + Sbjct: 73 ELRNLRLKVGMIF-----QQFNLFPHLSVGRNIMISPMIVKGV----SEKDARALAMKNL 123 Query: 400 KWLGIKTADLETPIGLLSGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVI 459 + +G+ + ++ LSGG QQ+ +AR L+ +P L+ DE T +D E+++ V Sbjct: 124 EKVGL-SEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVR 182 Query: 460 AMCRKGMSILFISSEIPEVLRCSDRMLVLR 489 + +GM+++ ++ E+ DR++ + Sbjct: 183 GLAHEGMTLIMVTHEMRFAREVCDRVVFMH 212 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,100,019 Number of extensions: 45089 Number of successful extensions: 468 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 99 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)