BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0823.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980522|ref|YP_001354000.1| 2-dehydro-3-deoxyphosphoglucona...    59   2e-10

>gi|152980522|ref|YP_001354000.1| 2-dehydro-3-deoxyphosphogluconate
           aldolase [Janthinobacterium sp. Marseille]
          Length = 206

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 26  NDEAHAI--GAALYESGFRIIEVPLNSPEPLASISILRKSLPADCIVGAGTVLKPALVQE 83
           +D  HA+    AL   G R++EV L +   LA+I  + + +P + I+G GT+ +      
Sbjct: 19  DDLTHAVPLARALVAGGIRVLEVTLRTQHGLAAIRAIAEQVP-EAILGVGTLTRSEDFAA 77

Query: 84  VKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNGADVLKMFPAEQLGP 143
            +DAG    V P     +I+ +  +GL   PGV T +E  AA + G   LK+FPA   G 
Sbjct: 78  ARDAGAVFGVSPGLTRELIQGSLASGLPLLPGVMTPSEVMAAREAGFHQLKLFPAVPAGG 137

Query: 144 QVVKAWRAVIARDIALLPVGGITPEGMAVFRAA 176
             +    A    D+   P GGI+ E  A F A 
Sbjct: 138 VGMLNAIAGPLPDVLFCPTGGISQETAAQFLAC 170


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 496,087
Number of extensions: 19985
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)