BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0822.p
         (382 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981406|ref|YP_001354765.1| mandelate racemase [Janthinobac...    81   1e-16
gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate lac...    59   5e-10

>gi|152981406|ref|YP_001354765.1| mandelate racemase
           [Janthinobacterium sp. Marseille]
          Length = 365

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 148/368 (40%), Gaps = 66/368 (17%)

Query: 17  FLKIETDEGIVGWG-----EPIVEGRAHSVAAAVDELADYLIGK--DPRNIEDHWTVLYR 69
            L ++TD G+ G        P+V G    +A    +L   L G+  DP  + ++     R
Sbjct: 36  LLDVQTDAGVCGHAYIFTYTPLVLGAVKQLA---RDLTLLLEGQPLDPLGLTNN----LR 88

Query: 70  GGFYRGGAIHM--SALAGIDQALWDIKGKALGVPVHQLLGGAV-----RDSIRVYSWIGG 122
             F   GA  +    LAGID A+WD   K L +P+ + LGG+V      D I  Y+  G 
Sbjct: 89  SRFMLIGAYGLLDMVLAGIDMAVWDAHAKFLELPLVRALGGSVGSGASADGIPAYASFGM 148

Query: 123 DRPADTAAAAKNAVARGFTAVKMN-GTEELQFIDSHDKIELTLANVQAVREAVGPNVGIG 181
           D  AD       AV RGF A+K+  G   LQ             ++  VR A+    G+ 
Sbjct: 149 DGLADAEKHVAAAVERGFKAIKIKIGYPTLQ------------EDIAVVRAAIKATEGVA 196

Query: 182 ---VDFHGRVHKPMAKVLIKELEPYKLMFIEEPVLSENSEALKEIAHLTSTPIALGERLY 238
              VD++  +    A V    L+   L++IEEP   +++    +IA    TP+ LGE L+
Sbjct: 197 RLMVDYNQSLDVAEAMVRCPALDDEGLLWIEEPTRYDDNCGHAQIAAAIKTPLQLGENLW 256

Query: 239 SRWDFKRILSEGYVDIIQPDVSHAGGITETRKIAMMAEAYDVALALHCPLGPIALASCLQ 298
                   L     D + PD+   GG++   +                     A+  C  
Sbjct: 257 GPRQVAESLRMKASDYMMPDLMKIGGVSGWMQ---------------------AVGVCAA 295

Query: 299 VDAGSYNAFIQEQSLGI-------HYNESNDLLDYIRDKNVFAYEDGYVKIPQGPGLGIE 351
            +    N F QE S+ +       HY E   + D I    +    +G   +   PG GI+
Sbjct: 296 NNVRVSNHFFQEISVHLLRVTPTAHYIEYFQMADPILVDPLLV-RNGNAIVRDCPGNGIQ 354

Query: 352 INEEYVRQ 359
             EE V +
Sbjct: 355 WKEEAVER 362


>gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate
           lactonizing enzyme family protein [Janthinobacterium sp.
           Marseille]
          Length = 388

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 45/327 (13%)

Query: 42  AAAVDELADYLIGKDPRNIEDHWTVLYRGGFYRGGAIHMSALAGIDQALWDIKGKALGVP 101
           A+ +++  D L   DP  I   W  ++      G      A+  ID A+WD   K  G P
Sbjct: 76  ASLINDAGDNL---DPHKI---WNTMFTNEKPGGHGERSVAIGTIDMAVWDAVAKIEGKP 129

Query: 102 VHQLLG-----GAVRDSIRVYSWIGGDRPADTAAAAKNA----VARGFTAV--KMNGTEE 150
           + QLL      G     I VY+  G   P       K+     + RG+T V  K+ G   
Sbjct: 130 LFQLLADRYGNGQADRKIFVYAAGGYYYPGQDHGKLKDEMRSYIDRGYTVVKKKIGGAS- 188

Query: 151 LQFIDSHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKVLIKELEPYKLMFIEE 210
                    ++  L  + ++   +G    + VD +GR     A    K L  Y L + EE
Sbjct: 189 ---------LDEDLRRIDSILSVLGDGQKLAVDANGRFDLDTAVKYAKALSQYDLFWYEE 239

Query: 211 PVLSENSEALKEIAHLTSTPIALGERLYSRWDFKRILSEGYV----DIIQPDVSHAGGIT 266
                + E    +      P+A GE L+S  D + ++  G +    D +Q D + + G+ 
Sbjct: 240 AGDPLDFELQATLRSYYDKPMATGENLFSMQDARNLIRYGGMRPDRDWLQFDCALSYGLV 299

Query: 267 ETRKIAMMAEAYDVALALHCPLGPIALASCLQVDAGSYNAFIQEQSLGIHYNESN-DLLD 325
           E  +   M   +  +     P G   ++  L + AG          LG+  NES  DL  
Sbjct: 300 EYLRTLDMLHEHGWSRKRCIPHGGHQMS--LNIAAG----------LGLGGNESYPDLFQ 347

Query: 326 -YIRDKNVFAYEDGYVKIPQGPGLGIE 351
            Y    +    ++GY+ +P  PG+G E
Sbjct: 348 PYGGFPDGVKVQNGYITLPDLPGIGFE 374


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 936,151
Number of extensions: 40141
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 297
Effective length of database: 906,776
Effective search space: 269312472
Effective search space used: 269312472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)