BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0815.p (791 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 286 3e-78 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 184 1e-47 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 137 2e-33 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 286 bits (733), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 178/466 (38%), Positives = 262/466 (56%), Gaps = 16/466 (3%) Query: 36 FIGGRFTRPGAQLEDVDPASGKLLAHLTQGSPADVEAAVNAAQAALPDWQALGGHGRARH 95 +I G + A + +PA G + + + E A+ AA AA P W A G RA Sbjct: 20 YINGAWVTGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERAGI 79 Query: 96 LYALARSVQRHARLLAVLETLDNGKPLRESRDIDVPLVARHFYHYAGWAQL--------- 146 + + +A LA L T + GKPL ESR +V A +A A+ Sbjct: 80 MRIWFDLIIANADDLAALMTAEQGKPLIESRG-EVIYGASFIEWFAEEAKRVSGDVMAST 138 Query: 147 --QEREFPDHVPLGVVGQIVPWNFPLLMLAWKIAPALALGNTVVLKPAETTSLSALLFAE 204 +R P+GV I PWNFP+ M+ K+APA+A G T+V+KPAE T LSAL AE Sbjct: 139 WSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIAE 198 Query: 205 LAQQAGLPAGVLNIVTGDG----ATGAAVVAHPGIQKIAFTGSTEVGRLIRQQTAGSGKS 260 LA +AG+P GV+N+VT D A G + + P ++ ++FTGST VGR++ +Q A + K Sbjct: 199 LAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVKK 258 Query: 261 LTLELGGKSPFIVFEDADIDAAIEGVVDAIWFNQGQVCCAGSRLLVQEGIHDLFIARLKT 320 + LELGG +PFIVF+DAD+DAA+ G + + + N GQ C +R V E I+D F+ +L Sbjct: 259 IGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLGA 318 Query: 321 RMEKLKVGAPLDKCSDMGALISAEQLQRVKRLVEQGVREGAQCHQVALQTDPAGCFYPPT 380 K+KVG +++ G LI A+ +++V++ V V +GA+ Q G FY PT Sbjct: 319 GAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFYEPT 378 Query: 381 LLTSVHPACTVATEEIFGPVLVAMSFRTPDEAVQLANNSRYGLAASIWSETIGLALGVAP 440 +L+++ P + EE FGPV + F+T DEAV AN++ +GLA+ +S IG VA Sbjct: 379 VLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWRVAE 438 Query: 441 QLKAGVVWINSTNQFDAAVGFGGYRESGYGREGGREGCYEYLKPRH 486 +L+ G+V IN+ + FGG ++SG GREG + G EYL+ ++ Sbjct: 439 KLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKY 484 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 184 bits (468), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/486 (30%), Positives = 240/486 (49%), Gaps = 28/486 (5%) Query: 31 ASFGHFIGGRFTRP-GAQLEDV-DPASGKLLAHLTQGSPADVEAAVNAAQAALPDWQALG 88 A H+I GR T G + +DV +PA+G+ A + S ADV+A V A+AA P W Sbjct: 5 AKIKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTA 64 Query: 89 GHGRARHLYALARSVQRHARLLAVLETLDNGKPLRESR-DIDVPLVARHFYHYAGWAQLQ 147 RAR L+ +++H LA T ++GK +++ ++ L F G QL Sbjct: 65 PLKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFA--CGVPQLL 122 Query: 148 EREFPDHV-----------PLGVVGQIVPWNFPLLMLAWKIAPALALGNTVVLKPAETTS 196 + +F D++ PLGV I P+NFP ++ W ALA GNT +LKP+E Sbjct: 123 KTQFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDP 182 Query: 197 LSALLFAELAQQAGLPAGVLNIVTGDGATGAAVVAHPGIQKIAFTGSTEVGRLIRQQTAG 256 +L+ AEL QQAGLP GV N++ GD ++ HP ++ ++F GST + I A Sbjct: 183 SPSLMVAELLQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAA 242 Query: 257 -SGKSLTLEL----GGKSPFIVFEDADIDAAIEGVVDAIWFNQGQVCCAGSRLLVQEGIH 311 G S L + G K+ +V DA+++ A++ ++ A + + G+ C A S + I Sbjct: 243 RKGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIA 302 Query: 312 DLFIARLKTRMEKLKVGAPLDKCSDMGALISAEQLQRVKRLVEQGVREGAQC----HQVA 367 D +A L R++ LKV ++ ++MG ++SA +++ ++ GV+ GA+ + Sbjct: 303 DKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLK 362 Query: 368 LQTDPAGCFYPPTLLTSVHPACTVATEEIFGPVLVAMSFRTPDEAVQLANNSRYGLAASI 427 + G F L V P T+ EEIFGPVL + A++L N +G S+ Sbjct: 363 VAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSL 422 Query: 428 WSETIGLALGVAPQLKAGVVWINSTNQFDAA-VGFGGYRESGYG--REGGREGCYEYLKP 484 ++ A + +++ G+V IN A FGG++ S +G G EG Y + Sbjct: 423 FTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRY 482 Query: 485 RHRLGR 490 + + R Sbjct: 483 KSIMQR 488 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 211/452 (46%), Gaps = 42/452 (9%) Query: 46 AQLEDVDPAS-GKLLAHLTQGSPADVEAAVNAAQAALPDWQALGGHGRARHLYALARSVQ 104 A +E +PA+ ++ + Q A +E A+ A + + WQA RA L A Q Sbjct: 598 ACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLFQ 657 Query: 105 RHARLLAVLETLDNGKPL-------RESRDIDVPLVARHFYHYAGWAQLQEREFPDHVPL 157 +HA L L + GK L RE+ D +Y+ A + + PL Sbjct: 658 QHATELIALLVREAGKTLPNAIGELREAIDF--------LRYYSAQAIASDA----NQPL 705 Query: 158 GVVGQIVPWNFPLLMLAWKIAPALALGNTVVLKPAETTSLSALLFAELAQQAGLPAGVLN 217 G+V I PWNFPL + +++ ALA N V+ KPAE T L A +L QAG+P L Sbjct: 706 GLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPENALL 765 Query: 218 IVTGDGAT-GAAVVAHPGIQKIAFTGSTEVGRLIR----QQTAGSGKSLTL--ELGGKSP 270 + G G T GA +V P + + FTGST+V + I+ Q++ GK + L E GG++ Sbjct: 766 FLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNT 825 Query: 271 FIVFEDADIDAAIEGVVDAIWFNQGQVCCAGSRLLVQEGIHDLFIARLKTRMEKLKVGAP 330 IV A + + V+ + + + GQ C A L +Q+ I + + L M++L++G P Sbjct: 826 MIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRP 885 Query: 331 LDKCSDMGALISAEQLQRVKRLVEQGVREGAQCHQVALQTDPAGCFYPPTLLTSVHPACT 390 +D+G +I AE ++ + Q G Q Q+ L G F P ++ Sbjct: 886 DHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQVRQLPLPV-TNGSFVAPCIIEIAD--IN 942 Query: 391 VATEEIFGPVLVAMSFRTPD--EAVQLANNSRYGLAASIWS---ETIGLALGVAPQLKAG 445 E+FGPVL + +R D + + N++ +GL I + ETI V + G Sbjct: 943 ELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDY---VVRHAQVG 999 Query: 446 VVWINSTNQFDAAVG---FGGYRESGYGREGG 474 +++N N A VG FGG SG G + G Sbjct: 1000 NIYVNR-NIVGAVVGVQPFGGEGLSGTGPKAG 1030 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,849,014 Number of extensions: 77525 Number of successful extensions: 260 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 4 Length of query: 791 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 700 Effective length of database: 884,594 Effective search space: 619215800 Effective search space used: 619215800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)