BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0810.p (519 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 236 2e-63 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 192 4e-50 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 110 2e-25 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 108 1e-24 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 105 1e-23 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 236 bits (603), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 256/485 (52%), Gaps = 22/485 (4%) Query: 17 LRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYIQ 76 L L + KR+ V A GI+L++ GEI+ +LGENG GKSTL+KII G+ P G++ Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 77 GERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSALND 136 G+ V P + LGI V+Q SL ++V EN+AL + H +L L R ++D Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALG---LPHDTKLDELARR--ISD 119 Query: 137 TAGRALRAVNLPASAEFLDTR-VDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKE 195 TA + E R V L + Q + I RA+ +++I+DEPT+ LT + Sbjct: 120 TAEQ--------YGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQA 171 Query: 196 VDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKARLGQL 255 V+ L + + L A G ++L++SHKLDE A+ V R G+ +E + A L ++ Sbjct: 172 VEKLFETLRKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRM 231 Query: 256 MTGKQLSEERYRVDAQLHKTRLEVRALTR------AGAFEDVSFALREGEILGITGLLDS 309 M G + ++ + + +T L V+ L+ A D++F LR GEILGI G+ + Sbjct: 232 MIGCEPPPIKHVLRSP-GQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGN 290 Query: 310 GRNELALALAGVAP-AQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRISEGLFLDKSIR 368 G+ EL AL+G P A+ I+L G + P G+G+VPE+R+ G D S+ Sbjct: 291 GQQELLAALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLA 350 Query: 369 DNIITTILRKMRGKFGALDAAACERFSVDTVRQLQIATPDVERPVQSLSGGNQQRVLIGR 428 DNI+ + G + A + + D + + + +SLSGGN Q+ ++GR Sbjct: 351 DNILLSHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGR 410 Query: 429 WLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPELLQNCDNLLLM 488 + NP+VLI+ PT GVDVG+ I + L G +++IS++L EL + D L+++ Sbjct: 411 EVMRNPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVI 470 Query: 489 KRGRI 493 +GR+ Sbjct: 471 AKGRL 475 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 155/517 (29%), Positives = 244/517 (47%), Gaps = 56/517 (10%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYI 75 L + GV KRF L I L + AGE++ LLGENG GKSTL +I G P G I Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 76 QGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSALN 135 G P +L LGI V+Q SL+ NMSV EN+ L R Q L + F + Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLG----RAQAILKQDFIIRRMQ 118 Query: 136 DTAGRALRAVNLPASAEFLDTRVD------ELPIATRQLIAIARAIATSARMVIMDEPTT 189 + A+ D ++D +L + RQ I I + + ++ R++++DEPT Sbjct: 119 EL-------------ADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTA 165 Query: 190 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTK 249 L +EVD+L+ V + +G V+ V+HKL E + + V R G V ++ Sbjct: 166 VLPPEEVDSLLAVCRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADM 225 Query: 250 ARLGQLMTGKQLSEERYRVDAQL---------------------HKTRLEVRALTRAG-A 287 L + M G+ + + A L L + AL G + Sbjct: 226 HALVRSMVGRDVKSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLS 285 Query: 288 FE---------DVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKL 338 F+ DV ++ GEI+GI G+ +G++EL +AG+ G + + + L Sbjct: 286 FQDKDGVTRLSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTG 345 Query: 339 QTPGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSVDT 398 + D G G +PEDR + + S+ +N+ L K +FG LD + + Sbjct: 346 SSAQDITDAGAGIIPEDRHAVACISELSVAENLFLGSLEKFS-RFGLLDREKMAKQAATM 404 Query: 399 VRQLQIATPDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHG-PTVGVDVGSKDIIYRI 457 + + + P+ SLSGGNQQ+ ++ R L+++P + +L PT G+DVG+ + ++ Sbjct: 405 MTEFDVRATSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNR 464 Query: 458 IQDLARQGMGVILISDDLPELLQNCDNLLLMKRGRIV 494 I+ A G+GV+LIS DL EL+ D + ++ RG IV Sbjct: 465 IRTAASNGLGVLLISSDLNELIAVSDRVAVLYRGAIV 501 Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 14/249 (5%) Query: 17 LRLQGV-HKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYI 75 L+LQG+ + GV L + L++ GEI + G G G+S L IIAG P+ G + I Sbjct: 279 LQLQGLSFQDKDGVTRLSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKI 338 Query: 76 QGERVEQLTPLASLSLGIETVYQD---LSLLPNMSVAENVALS--EQLVRHQGRLARLFD 130 + + + G + +D ++ + +SVAEN+ L E+ R L D Sbjct: 339 GEQDLTGSSAQDITDAGAGIIPEDRHAVACISELSVAENLFLGSLEKFSRFG-----LLD 393 Query: 131 RSALNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMD-EPTT 189 R + A + ++ A++ + + L +Q +AR ++ + ++ +PT Sbjct: 394 REKMAKQAATMMTEFDVRATSP--NAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTR 451 Query: 190 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTK 249 L V+A+ I +NG+ VL +S L+E A+ + V G V + P + Sbjct: 452 GLDVGAVEAVFNRIRTAASNGLGVLLISSDLNELIAVSDRVAVLYRGAIVGELPADPANR 511 Query: 250 ARLGQLMTG 258 ++G +M+G Sbjct: 512 EKIGAMMSG 520 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 135/533 (25%), Positives = 245/533 (45%), Gaps = 69/533 (12%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKS-TLIKIIAGAQPPSEG-EI 73 L +Q + F + + +I AGE + L+GE+G GK+ T + ++ Q + G +I Sbjct: 3 LLDIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATYGGKI 62 Query: 74 YIQGERVEQLTPLASLSL---GIETVYQD--LSLLPNMSVAENVALSEQLVRHQGRLAR- 127 +G+ + Q T A S+ + ++Q+ +L P ++ +A E L+ H+G AR Sbjct: 63 LFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIA--EVLMLHEGISARA 120 Query: 128 -------LFDRSALNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSAR 180 L D++ + + RAL + EL RQ IA A+A + Sbjct: 121 AALRTVELLDKTGIPEPQRRAL-------------SYPHELSGGQRQRAMIAMALACKPK 167 Query: 181 MVIMDEPTTSLTQKEVDALVKVINGL-RANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 239 ++I DEPTT+L +V+++N L R +AVL ++H L+ + V G + Sbjct: 168 LLIADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLL 227 Query: 240 AQGPIQE-FTKARLGQLMTGKQLSEERYRV-----DAQLHKTRLEVRALT---RAGAFED 290 Q+ F+ R + T K L+ + +++ +A + E + T + G F+ Sbjct: 228 EVATTQQLFSAPR--EAYTKKLLASQPHQLVNVVSEAATPLLKAEQVSCTFDIKKGWFKK 285 Query: 291 VSFAL--------REGEILGITGLLDSGRNELALALAGVAPAQT-GQIVLDGRTLKLQT- 340 + F + GE LGI G SG++ L LAL ++ A G+I DG+ + Q+ Sbjct: 286 IPFVAVDQVDVQVKPGETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSR 345 Query: 341 ----PGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSV 396 P A + P +S +++ + + + + + G G A A Sbjct: 346 DALRPLRARMQIVFQDPFASLSPRRTVEQIVGEGL--ALHQPQLGPHGIRKAVA------ 397 Query: 397 DTVRQLQIATPDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYR 456 D ++++ ++ + R SGG +QR+ I R L + P +++L PT +DV + + Sbjct: 398 DGLQEVGLSAEMMTRYPHEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLL 457 Query: 457 IIQDLARQ-GMGVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSESDLS 508 ++ DL ++ GM I IS DL + +++MK GR+V +GL+++ LS Sbjct: 458 LLADLQKKYGMAYIFISHDLAVIRAMAHRVMVMKDGRVVE----QGLTQTVLS 506 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 144/530 (27%), Positives = 220/530 (41%), Gaps = 66/530 (12%) Query: 16 FLRLQGVHKRFA--GVHALRGIDLTIHAGEIYHLLGENGCGKS----TLIKIIAGAQPPS 69 + ++ +H RF G ++GI +H GE L+GE+G GKS TL+ + Sbjct: 12 LVEVENLHVRFGHGGPAVIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQ 71 Query: 70 EGEIYIQGE---RVEQLTPLASLSLGIETVYQDL--SLLPNMSVAENVALSEQLVRHQGR 124 + G+ R + T I V QD SL P +V VA E L H Sbjct: 72 ADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVA--EPLKLH--- 126 Query: 125 LARLFDRSALNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIM 184 A+L + + L +V +P L +L RQ IA AIA + ++I Sbjct: 127 -AKL-TKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIA 184 Query: 185 DEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPI 244 DEPTT+L ++ ++ LR A+L VSH + + V GE V QGP+ Sbjct: 185 DEPTTALDAAVQAQVLDLLESLRTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPL 244 Query: 245 --------QEFTKARLGQLMTGKQLSEERYRV----DAQL--------------HKTRLE 278 +TK+ L + + ++ R ++ D L + +E Sbjct: 245 DAILHDPQHPYTKSLLSAVSSVQKRGPVRQKIAVTEDGHLATLPSELPPGVINNNPIVVE 304 Query: 279 VRALT---------RAGAFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQI 329 V LT R A +VSFALR+GE +GI G SG+ L + G+ G + Sbjct: 305 VNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNVGNV 364 Query: 330 VLDGRTLKLQTPGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAA 389 L+ Q D ++ RI + +F D + T+ R + G Sbjct: 365 -----RLRDQVWSD-LSDAQQRAERKRI-QVVFQDPLASFDPRYTVERVLFEALGVAGYT 417 Query: 390 ACERFSVDTVRQLQIATPDVE----RPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVG 445 E+ + L + D RP++ LSGG +QR+ I R LA P VLI P Sbjct: 418 DTEKTRARAIELLHLVRLDQSYLQRRPIE-LSGGQRQRIAIARALAPEPEVLICDEPVSA 476 Query: 446 VDVGSKDIIYRIIQDLA-RQGMGVILISDDLPELLQNCDNLLLMKRGRIV 494 +DV + I ++ DL R G+ + IS DL + + D +L+MK G +V Sbjct: 477 LDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVV 526 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 4/233 (1%) Query: 14 QEFLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEI 73 Q L + GV KRF G+ AL +++ I G+IY L+G NG GK+T +I G G Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 74 YIQGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSA 133 + G+ P GI +Q++ L M+ ENV + + HQG +F A Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKA 123 Query: 134 LN----DTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTT 189 + RA+ + A+F + L ++ + IARA+AT +++ +DEP Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 190 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQG 242 + E L +++ ++A G +L + H + + + V G+ +A+G Sbjct: 184 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEG 236 Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 11/214 (5%) Query: 287 AFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAIT 346 A DV+ + +G+I G+ G +G+ + G+ A TG L G+ P Sbjct: 21 ALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELAGKPYSPSAPHKVAK 80 Query: 347 HGIGYVPEDRISEGLFLDKSIRDNI-ITTILRKMRGKFGALDAAACERFSVDTVRQLQIA 405 GI ++ LF + + +N+ I +R +G FGA+ R +RQ + Sbjct: 81 AGIARTFQNI---RLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARREEAEIRQRAME 137 Query: 406 TPDV-------ERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRII 458 + ER + LS G+Q+R+ I R LA +P++L L P G++ K + ++ Sbjct: 138 LLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELL 197 Query: 459 QDLARQGMGVILISDDLPELLQNCDNLLLMKRGR 492 + +G ++LI D+ ++ CD + ++ G+ Sbjct: 198 VKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGK 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,146,242 Number of extensions: 48761 Number of successful extensions: 451 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 80 Length of query: 519 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 432 Effective length of database: 899,382 Effective search space: 388533024 Effective search space used: 388533024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)