BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0808.p (520 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 118 1e-27 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 110 2e-25 gi|152981002|ref|YP_001353865.1| signal transduction protein [Ja... 103 3e-23 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 102 7e-23 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 97 2e-21 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 260 VLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAAQNRL 319 +L +LR I N++ VL YQP V + + G EAL RW + P F+PLA + L Sbjct: 450 LLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGL 509 Query: 320 STALAKVVLARALREMRELLQAN-PALILTINTEVADIEDADFIQFALEITAPTPALRTQ 378 L + VL A R+ R A P + +++N + D ++ I T Sbjct: 510 IIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQH 569 Query: 379 LHLEVTERADIRSATFTRNIE-------QLRQGGFAIWIDDFGTGSANLSHLSYAQFDGI 431 L LE+TE + T ++E QLR G I +DDFGTG ++LS+L D + Sbjct: 570 LELEITE------SVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTL 623 Query: 432 KIDRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGW 491 KID+ F ++T ++V ++ L L+L V+ EGIETE+Q Q + A QG+ Sbjct: 624 KIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCD-EGQGY 682 Query: 492 LFSKAM 497 L SK + Sbjct: 683 LMSKPV 688 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 3/242 (1%) Query: 256 RNQGVLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAA 315 R+ +L + + I +DE L YQP V +++ L G EAL RW+ + I P+ F+ LA Sbjct: 382 RDVELLTRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAE 441 Query: 316 QNRLSTALAKVVLARALREMRELLQAN-PALILTINTEVADIEDADFIQFALEITAPTPA 374 +N L L + V+ A R++ + A P + + IN ++D+ ++ +E A Sbjct: 442 ENDLIVLLGRWVIDAACRQIADWRAAGLPLVPVAINVSPKQLKDSALLETVMETLARYQI 501 Query: 375 LRTQLHLEVTERADIRS-ATFTRNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKI 433 L +E+TE I T R +EQLR G I +DD+GTG + L +L IKI Sbjct: 502 EPGLLEIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKI 561 Query: 434 DRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLF 493 DR F + + +V + + LA L LQVV EG+E++EQL + A QG+ F Sbjct: 562 DRSFVRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQL-VHLKTAGCDQVQGFYF 620 Query: 494 SK 495 + Sbjct: 621 KR 622 >gi|152981002|ref|YP_001353865.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 745 Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 11/257 (4%) Query: 251 YLRLRRNQGV--------LEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQ 302 +L RN G+ + LR + ++YQP + + G EAL RW D Sbjct: 477 HLYFSRNMGIDIRERVNMMHALRTAFEERRLTVVYQPQIDMVTRQPVGAEALLRWTTEDG 536 Query: 303 PEIGPDVFVPLAAQNRLSTALAKVVLARALREMRELLQANPA-LILTINTEVADIEDADF 361 I P+ F+P+A + L L + VL +A +E+ + A ++++N F Sbjct: 537 SMISPNRFIPIAEYSGLIIELGEWVLRQACQELVRIQSLGFADFMVSVNVSQVQFRHPHF 596 Query: 362 IQFALEITAPTPALRTQLHLEVTERADIRSA-TFTRNIEQLRQGGFAIWIDDFGTGSANL 420 + + T A + LE+TE + + ++Q+ G +I IDDFGTG ++L Sbjct: 597 LSMLRKALHDTNAPAHCVELEITESMAMEEPDALIKLLDQITATGVSIAIDDFGTGFSSL 656 Query: 421 SHLSYAQFDGIKIDRLFTAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLIC 480 SHL D +KIDR F ++ S S+ +++L L+L V+ EG+E E Q ++ Sbjct: 657 SHLQKLSVDRLKIDRAFVTEITDSSRGSSIAEMIIQLGRNLELDVIAEGVEDERQAAILT 716 Query: 481 AIAPGIHAQGWLFSKAM 497 + + QG+LF+K M Sbjct: 717 ELGCPL-GQGYLFAKPM 732 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 121/235 (51%), Gaps = 5/235 (2%) Query: 264 LRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAAQNRLSTAL 323 LR + +E+ + YQP V + D S++G+E L RW + I P+ F+P+A + + + Sbjct: 620 LRFALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVPI 679 Query: 324 AKVVLARALREMRELLQANP---ALILTINTEVADIEDADFIQFALEITAPTPALRTQLH 380 + +A +++ Q P +L + IN + + F +I + + + Sbjct: 680 GMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMVE 739 Query: 381 LEVTERADIRSATFT-RNIEQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKIDRLFTA 439 LE+TE + + + T N+ L++ G + +DDFGTG ++L++L D +KID+ F Sbjct: 740 LELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFVR 799 Query: 440 ALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLFS 494 + + ++ ++ LA L+LQ EG+ET EQ+Q + + + QG+LFS Sbjct: 800 GIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNL-GQGFLFS 853 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 3/240 (1%) Query: 260 VLEKLRDGIANDEIVLLYQPIVCVRDLSLKGYEALARWRPLDQPEIGPDVFVPLAAQNRL 319 V++ LR + E L YQP D + G EAL RW+ + + P F+ LA + L Sbjct: 437 VIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAEKTGL 496 Query: 320 STALAKVVLARALREMRELL-QANPALILTINTEVADIEDADFIQFALEITAPTPALRTQ 378 + + VL A R+MR+ + + +N + + ++ E A T Sbjct: 497 IVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNNLPATC 556 Query: 379 LHLEVTERADIRSATFTRNI-EQLRQGGFAIWIDDFGTGSANLSHLSYAQFDGIKIDRLF 437 L LEVTE + + + I EQL G I IDDFGTG ++L +L +KIDR F Sbjct: 557 LMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELKIDRGF 616 Query: 438 TAALSTGSPLRSVVPNLLRLATELDLQVVIEGIETEEQLQLICAIAPGIHAQGWLFSKAM 497 L+ GS S+V ++ L L+L++V EG+ETE+Q + + + QG+ M Sbjct: 617 IRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDT-LQGYFMGHPM 675 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,087,878 Number of extensions: 41645 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 14 Length of query: 520 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 433 Effective length of database: 899,382 Effective search space: 389432406 Effective search space used: 389432406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)