BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0801.p
         (112 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982238|ref|YP_001353039.1| hypothetical protein mma_1349 [...    55   8e-10

>gi|152982238|ref|YP_001353039.1| hypothetical protein mma_1349
           [Janthinobacterium sp. Marseille]
          Length = 122

 Score = 55.5 bits (132), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 1   MYLCHVTQLPEGG--ARGFDTEGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYL 58
           + +C    L +GG   R   T G   AT F++R    V  + + C H    L W    + 
Sbjct: 5   ILICDSAALEDGGTGVRFPLTAGGEDATGFVVRYNGVVYGYLNRCAHIPIELDWNNGEFF 64

Query: 59  DASGEHVVCAAHGALFDPLTGVCTLGPCLGDTLTAV 94
           +  G +++C+ HGA++ P TG C  GPC G  L  +
Sbjct: 65  ETEGRYLICSTHGAIYLPETGRCAGGPCRGGRLRTI 100


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 330,528
Number of extensions: 13969
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 1,221,021
Length adjustment: 71
Effective length of query: 41
Effective length of database: 958,534
Effective search space: 39299894
Effective search space used: 39299894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)