BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0797.p (307 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 144 5e-36 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 130 1e-31 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 92 5e-20 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 144 bits (364), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 6/304 (1%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRM 60 M +DLNLLVA DA++ E N++ AA + +SQ AMSNALARLR F+D L ++ + M Sbjct: 1 MNIASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGM 60 Query: 61 EPTPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAH 120 +PTP AE L + V+ I ++ F P + + F +++ +L+P+++ Sbjct: 61 QPTPYAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQ 120 Query: 121 AEGPD--IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDS 178 P+ +R +P+ Q ++ E+DL V + + ++ ++ C+V + Sbjct: 121 VAAPNACVRVRRIPE-QGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGH 179 Query: 179 PLAEGELTRERYMAAGHV-VMVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCMALVQ 237 P LT ++Y+ HV VM H +++E + + L R++ +TS NF +++ Sbjct: 180 PTVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTE-HLRRKIVMTSQNFLVLPMIIE 238 Query: 238 GTDRIATVHGRLARQLAP-QLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVFLE 296 TD IAT+ R+A+++A + + ESP+P + WH DP +W+R + + Sbjct: 239 QTDAIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVT 298 Query: 297 SARE 300 RE Sbjct: 299 LFRE 302 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 159/312 (50%), Gaps = 14/312 (4%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRM 60 M F LDLNLL DA++TE N++RAA ++Q A+SNAL RLR+ D L+I+ + Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 61 EPTPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAH 120 +PT RAE L V L +E +++ V R ++ FR++++D + ++ +P ++ Sbjct: 61 KPTSRAEELWPVVRRALSDLEAAVTPDTFDVSR-ANTTFRMAMADATAALWLPFLVRAIE 119 Query: 121 AEGPDIRFALMP-QVQDPTRSLDRAEVDLLV-----LPQEFCTPDHPA------EEVFRE 168 + P + ++P ++P L R ++DL + + + + + A E ++ Sbjct: 120 KDAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179 Query: 169 RHVCVVWRDSPLAEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFN 228 +VCV+ ++ PLA+ ELT + Y AA H+++ G ++ + N LG ERR+ +T Sbjct: 180 EYVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTN-LGRERRILLTVNQ 238 Query: 229 FASCMALVQGTDRIATVHGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIE 288 F + +V +D I + L ++ K+ P L ++H M WH +P + Sbjct: 239 FFTAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHK 298 Query: 289 WLRRVFLESARE 300 WLR S E Sbjct: 299 WLREQLSASTEE 310 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 14/310 (4%) Query: 4 NKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRMEPT 63 + LD++L+ L LL E N+SR A K + Q ++S +L +LRE D LL++ R M PT Sbjct: 6 DHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPT 65 Query: 64 PRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAHAEG 123 E L + +L E K AFVP+ R F I+ D+ + VIAR E Sbjct: 66 QHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRES 125 Query: 124 PD---IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDH-PAEEVFRERHVCVVWRDSP 179 P + AL P D R L E+DL++ + P+H ++F + VC++ D Sbjct: 126 PKSHIVIHALGPDT-DYVRLLSDGELDLVIANWD-EMPEHLHMSKLFDDPIVCLMRSDCA 183 Query: 180 L----AEGELTRERYMAAGHVV--MVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCM 233 A+ +T E Y++ H + PG H +++ ++ K L R + V S +F Sbjct: 184 YAKRTAKDAMTIEDYLSLPHAAPSQILPGYH-GTIDTFL-EKQNLRRNIVVESAHFRMLP 241 Query: 234 ALVQGTDRIATVHGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRV 293 +V+ TD + T + L + P+ + WH +WLR Sbjct: 242 YMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQ 301 Query: 294 FLESAREMDE 303 +A+ + + Sbjct: 302 VCAAAKVLSD 311 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 665,182 Number of extensions: 26271 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 3 Length of query: 307 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 224 Effective length of database: 914,170 Effective search space: 204774080 Effective search space used: 204774080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)