BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0793.p
         (415 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin...    68   8e-13

>gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 596

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 38/367 (10%)

Query: 50  YQAMADAGFVKALLPESFGGTAMSTLDFALAAEELTAADVNLPSALLGTGLGLHAVVHHG 109
           ++A A AG+     P  FGG  +  L      E L +A ++     L T   + A++  G
Sbjct: 81  FKAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEMLNSASLSFALCPLLTDGAIEALMTAG 140

Query: 110 TPEQKQRFLPDFIEDGSRLAALAFTEVTGGANYDSTDPSVGVQTFARLEGD-EWVINGAK 168
           + +QK++FLP+FI  G     +  TE   G++         V++ A  +GD  + I+G K
Sbjct: 141 SDQQKEKFLPNFIA-GKWTGTMNLTEPQAGSDL------ALVRSRAVPQGDGTYKISGTK 193

Query: 169 HYTTNGTGWDGKGAHLYSVICRTDPALPPQQSLAVIMVP----------GDAPGIEIVSL 218
            + T G   D     ++ V+ RT  A    + +++ +VP          G+      VS+
Sbjct: 194 IFITYGE-HDMAENIIHLVLARTPDAPEGVKGISLFLVPKFLVNEDGSLGERNDAFCVSI 252

Query: 219 LDTMGHRATISPRIHFNNVRVPASNIVGKPGDGITMLEGAFSWTAALIGAACVGVMRAAF 278
              +G +A+ +  + F +       ++G+   G+  +    +     +G   + V   A+
Sbjct: 253 EHKLGIKASPTAVLQFGDHGGAIGTLIGQENRGLETMFIMMNAARFAVGIQGISVAERAY 312

Query: 279 DIALKFAHSDRRSG-------TVPVIEHQNVGFMLADIKMRIEAARYLTWKSCHQLDLTE 331
             A+ +A    +S         V +I   +V  ML  ++ +IEAAR L +      D+  
Sbjct: 313 QKAVAYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGASAFDIAH 372

Query: 332 GRSRE------------LAVITKTYCSELCVQVVYDAMRVVGVDAYTDLYPLAGLMQDAL 379
               E            L  I K + +E+ + V    +++ G   + +    A   +DA 
Sbjct: 373 HHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVASTGLQIHGGMGFIEETGAAQYYRDAR 432

Query: 380 CFPLYDG 386
              +Y+G
Sbjct: 433 ILTIYEG 439


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,037,104
Number of extensions: 46717
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 329
Effective length of database: 903,079
Effective search space: 297112991
Effective search space used: 297112991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)