BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0790.p
         (549 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980643|ref|YP_001354342.1| chaperonin GroEL (Hsp60) [Janth...   902   0.0  

>gi|152980643|ref|YP_001354342.1| chaperonin GroEL (Hsp60)
           [Janthinobacterium sp. Marseille]
          Length = 548

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/530 (86%), Positives = 492/530 (92%), Gaps = 1/530 (0%)

Query: 1   MAAKQVIFGDEARAKVVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60
           MAAK+VIFGD ARAK+V GVN+LANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI
Sbjct: 1   MAAKEVIFGDAARAKMVEGVNVLANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60

Query: 61  ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120
           ELKDKL+NMGAQLVKEVAS+TSDNAGDGTTTATVLAQAIVREG KYVAAG NP DLKRGI
Sbjct: 61  ELKDKLQNMGAQLVKEVASRTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGI 120

Query: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180
           DKAV A V ++  +AKP TT+KEIAQVGSISANSDA IG+ IA+AMEKVGKEGVITVEDG
Sbjct: 121 DKAVAATVEQLAAIAKPCTTTKEIAQVGSISANSDASIGERIAEAMEKVGKEGVITVEDG 180

Query: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240
           KSL +ELDIVEGMQFDRGYLSPYFINN EKQ   L+NPFILL DKKISNIRDLLPVLEQV
Sbjct: 181 KSLNDELDIVEGMQFDRGYLSPYFINNPEKQTAILENPFILLCDKKISNIRDLLPVLEQV 240

Query: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300
           AKAGRPLLI+AED+EGEALATLVVNNIRGILKT AVKAPGFGDRRKAMLEDIAIL+GGQV
Sbjct: 241 AKAGRPLLIIAEDIEGEALATLVVNNIRGILKTCAVKAPGFGDRRKAMLEDIAILSGGQV 300

Query: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360
           +AEEVGLTLEK TL ELGQAKR+EIGKENTT+IDGNG+A  IEARV  IR QI EATSDY
Sbjct: 301 VAEEVGLTLEKITLEELGQAKRIEIGKENTTLIDGNGQAVTIEARVKQIRAQIEEATSDY 360

Query: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420
           DREKLQERVAKLAGGVA+IKVGAATEVEMKEKKARVEDALHATRAAVEEG+VPGGGVALL
Sbjct: 361 DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALL 420

Query: 421 RARANVKDLKGDNADQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480
           RARA +K +KGDN DQEAGI+IVLRA+EEPLR IV NAG+E SVVV KVLEG GNFGYNA
Sbjct: 421 RARAAIK-IKGDNPDQEAGIRIVLRAMEEPLRMIVQNAGEEASVVVAKVLEGKGNFGYNA 479

Query: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEVAEDKPA 530
           +NGTYGD+VE+GVLDPAKVTRSALQNAAS+A+L+LTTD +VAEVAEDK A
Sbjct: 480 ANGTYGDMVEMGVLDPAKVTRSALQNAASIAALLLTTDCMVAEVAEDKAA 529


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,116,263
Number of extensions: 46043
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 461
Effective length of database: 895,685
Effective search space: 412910785
Effective search space used: 412910785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)