BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0789.p (411 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 149 4e-37 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 120 2e-28 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 99 5e-22 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 97 1e-21 gi|152980637|ref|YP_001352730.1| outer membrane protein (porin) ... 95 9e-21 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 176/388 (45%), Gaps = 68/388 (17%) Query: 1 MKKSILALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQ 60 MKKS+LALAVLGAF GAA AQS++T+YG VD AH +D G G + Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDLGF------------AHVDD--GNPAGSK 46 Query: 61 MALDSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNV----------------DSGDAGQ 104 +DSG SR+G KG EDLG GLKA+F +E ++G A Sbjct: 47 NGIDSGGQSASRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANN 106 Query: 105 KGVLWGRQATVGL-SGNFGTVLAGRQKDVLDDVGSITSPGDFGGVVSRVHSLNLDRT--- 160 G + R ATVGL S FGTVL GRQ V+ D P GG V + ++ + Sbjct: 107 AGG-FNRFATVGLQSAAFGTVLLGRQTSVIKDAYDQIDPFGDGGTVGAISTVFFNGVLAG 165 Query: 161 NGERVNNSIRYNTPDFNGFIGSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQS 220 + R++NS +Y + F GF YGFGE G TG+ ++GLG YANGPLNV Y Sbjct: 166 DYGRISNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYH-- 223 Query: 221 KMGNANASDVNGASACNGPGKNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTR 280 N + S V S G K L A+Y FG K++G+Y +L + T Sbjct: 224 ---NQDRSTVANPSVQQAEG-------KLMLLGATYDFGVVKLHGAYGDTKLENSVANTE 273 Query: 281 FDSRFDSFAAFIDPKKLGLYQPAAKG----DYTIG---GANNESSQTFDIGVNYRLSPAL 333 R LG+ P G YT +N ++ F I +Y LS Sbjct: 274 VKYR---------NYMLGVSAPVGPGTIFASYTANDNRSVDNADAKKFAISYSYDLSKRT 324 Query: 334 SLISSLQYTRAKFVRTSDGRLLQVNLGA 361 +L YT DG + +N GA Sbjct: 325 NL-----YTGYSKTSNDDGSRIGLNAGA 347 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 115/416 (27%), Positives = 176/416 (42%), Gaps = 94/416 (22%) Query: 1 MKKSILALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQ 60 MKK++ A ++L + GA + QS++T+YG VD +G+ ++A + G D+G Q Sbjct: 1 MKKTLFAFSMLASMAGATYGQSSVTVYGVVD--------LGLKIENAGNGTVTGIDSGNQ 52 Query: 61 MALDSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQKGVLWGRQATVGLSGN 120 SR+G KG EDLG GLKA F +E GFN DSG + RQ+ V L+G Sbjct: 53 SV--------SRVGFKGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSLAGG 104 Query: 121 FGTVLAGRQKDVLDDVGSITSPGDFGGVVSRVHSLNLDRTNGERVNNSIRYNTPDFNGFI 180 FG V GR + ++ ++ P F ++ S+ + G R++N++ Y+ NG Sbjct: 105 FGEVKLGRVQTMVFTNSAVFDP--FADTLAG-DSVRIFNYGGNRIDNTVNYSFAAKNGIN 161 Query: 181 GSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNANASDVNGASACNGPG 240 G Y FGE AG T + ++ YA+GPL L Y +K DV G + Sbjct: 162 GQAAYSFGEVAGNTSASRTVAGAIGYASGPLATVLTYQDTK-------DVTGNDSA---- 210 Query: 241 KNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTRFDSRFDSFAAFIDPKKLGLY 300 KT + +Y F GL Sbjct: 211 -------KTTLIGGNYNF---------------------------------------GLL 224 Query: 301 QPAAKGDYTIGGANNESSQTFD-----IGVNYRLSPALSLISSLQYTRAKFVRTSDGRLL 355 QP I A N+ T D +G+ L+ A ++++S R K + +D + Sbjct: 225 QPF------IAYAVNKGFGTLDTRDALLGLKINLTSADTIMTSYMQKRDKVIDNADAK-- 276 Query: 356 QVNLGAKYELSKRTTTYAVLRNLRSSDMYNVGLSSDRVPGANRGQTGINAGLIHSF 411 Q+ +G + LS RT Y L + D ++ RV A + N G+ H F Sbjct: 277 QIAIGYTHNLSVRTNLYTSWARLSNDDN-----AAYRVTSAGKTDKLFNIGIRHKF 327 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 125/271 (46%), Gaps = 42/271 (15%) Query: 6 LALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQMALDS 65 LALA + A G A+ AQS++ +YG +D +L+Y + G G +++ Sbjct: 9 LALAAMLACGTASQAQSSVQVYGLIDVALAYDKQPG---------------KAGVTGVEN 53 Query: 66 GLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQ--KGVLWGRQATVGLSGNFGT 123 G + S LG+KG EDLGGGL IF +E+ F D+G G+ W R + VGL G FG+ Sbjct: 54 GKMTTSYLGLKGSEDLGGGLSTIFALESYFRADTGSNGRFDGDGFWTRSSYVGLQGRFGS 113 Query: 124 VLAGRQKDVLDDVGSITSP-GD-FGGVVSRVHSLNLDRTNGER-VNNSIRYNTPDFNGFI 180 V GR L + +P GD FG S H G+ ++SI Y +P+F+G Sbjct: 114 VRLGRNSVPLFISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGWSDSIAYVSPNFSGLT 173 Query: 181 GSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNANASDVNGASACNGPG 240 ++I GE G G S Y GPL + Y + + G A A Sbjct: 174 VNLIAAAGEGNGGPNVGGSV----LYTKGPLGLTAVYQRVRKGAAIA------------- 216 Query: 241 KNGDTCLKTWTLAASYQFGPAKVYGSYSHVR 271 DT TW L +SY F KV+ Y V+ Sbjct: 217 ---DTT--TWQLGSSYDFDVVKVFAQYGQVK 242 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 114/399 (28%), Positives = 170/399 (42%), Gaps = 72/399 (18%) Query: 4 SILALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQMAL 63 S+L A + ++ + AQS++T+ G D G G + D A + Sbjct: 8 SVLLTASILSYSSLSRAQSSVTMEGIAD---------GFMGSMRNSGDAARTS-----KV 53 Query: 64 DSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQKG--VLWGRQATVGLSGNF 121 DSG + S +G KG EDLGGGLKA FT+ + +D G G+ G + R A V LSG+F Sbjct: 54 DSGGLSTSYIGFKGFEDLGGGLKASFTLGAFYRIDDGAYGRFGGDTFFARDANVALSGSF 113 Query: 122 GTVLAGRQK----------DVLDDVGSITSPGDFGGVV-SRVHSLNLDRTNGERVNNSIR 170 G ++ GR + ++D S+ SP +V + V RT+ +NSI Sbjct: 114 GKLMLGRMTPPTTLPLYMFNPVEDSFSL-SPLVLHTIVGTNVFPGTFGRTDSAW-SNSIA 171 Query: 171 YNTPDFNGFIGSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNANASDV 230 Y +P F G ++ Y FGE AG + S + G Y NGPL +GL Y ++GN V Sbjct: 172 YTSPTFAGLTFNLHYQFGEAAGNS-SKNNKGANALYQNGPLALGLAYHDVQVGNP----V 226 Query: 231 NGASACNGPGKNGDTCLKTWTLAASYQFGPAKVYGSYSHVRLPLTAPRTRFDSRFDSFAA 290 + NGP + + + A V GSY L +F + +D Sbjct: 227 DNPIVPNGPSVMLSVPVPGGPNLVATRQKLAFVGGSYDFSYL-------KFFATYDRATH 279 Query: 291 FIDPK----KLGLYQPAAKGDYTIGGANNESSQTFDIGVNYRLSPALSLISSLQYTRAKF 346 +D K LGL P G L+ ++ T+ + Sbjct: 280 DVDLKDQTGTLGLSVPLGNG---------------------------KLLGAVAQTKRES 312 Query: 347 VRTSDGRLLQVNLGAKYELSKRTTTYAVLRNLRSSDMYN 385 SD + V++G Y LSKRT Y+ L N +++D N Sbjct: 313 ALFSDVKRTTVSVGYDYFLSKRTDLYSFLMNDKTTDYAN 351 >gi|152980637|ref|YP_001352730.1| outer membrane protein (porin) [Janthinobacterium sp. Marseille] Length = 391 Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 120/402 (29%), Positives = 167/402 (41%), Gaps = 73/402 (18%) Query: 4 SILALAVLGAFGGAAHAQSNITIYGAVDASLSYTNKIGISGKDAHGNDIAGKDTGGQMAL 63 S+L L AF AQ+++ + G +D Y I SG D + Sbjct: 11 SVLGLLAC-AFSTQVLAQTSVQVGGMLDV---YAGSIKRSG-----------DAASTSVV 55 Query: 64 DSGLIKGSRLGIKGVEDLGGGLKAIFTIENGFNVDSGDAGQKGV--LWGRQATVGLSGNF 121 +SG ++ S G KG E+LG GLKA F + D G G+ G ++ R A VGLSG+F Sbjct: 56 NSGGLQTSWWGFKGTEELGNGLKAHFALTGFMRPDVGAMGRFGTDTMFSRDANVGLSGSF 115 Query: 122 GTVLAGRQKDVLDDVGSITSPGDFGGVVSRVHSLNLD-RTNGERV--------------- 165 GTV GR D+ + + FG + L L +T+ R Sbjct: 116 GTVSLGR--DLAPNFVPSLTFNPFGSSF-QFSPLGLHTQTSSSRYAGRAWSATVAGDTAW 172 Query: 166 NNSIRYNTPDFNGFIGSVIYGFGEQAGKTGSGQSFGLGGTYANGPLNVGLGYFQSKMGNA 225 +N I Y TP GF S+ GEQAG +G +FG YANGPL+ G YFQS N Sbjct: 173 SNEIMYVTPKLGGFTTSLFLQLGEQAGSSGK-NNFGANTMYANGPLSFG-AYFQSVKSNN 230 Query: 226 NASDVNGASACNGPGKNGDTCLKTWTLAAS----------YQFGPAKVYGS--YSHVRLP 273 V GAS T+ LAAS Y K++G+ YS +L Sbjct: 231 PVDPVTGASQVFSFTPYNRASGATYALAASKNDTWFVGGAYDLQFIKLFGTLNYSTNKLL 290 Query: 274 LTAPRTRFDSRFDSFAAFIDPKKLGLYQPAAKGDYTIGGANNESSQTFDIGVNYRLSPAL 333 A +R+D + ++ +LG P KG + A N + L Sbjct: 291 NAADDSRYDLKSNTV-------QLGASMPIGKGSALLSWAR----------TNVKADGDL 333 Query: 334 SLISSLQYTRAKFVRTSDGRLLQVNLGAKYELSKRTTTYAVL 375 S + ++ VR + V+LG Y LSKRT Y+V+ Sbjct: 334 SAVLGNSDVQSSLVRNT------VSLGYDYFLSKRTDVYSVV 369 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,040,807 Number of extensions: 50752 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 10 Length of query: 411 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 325 Effective length of database: 903,079 Effective search space: 293500675 Effective search space used: 293500675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)