BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0787.p (345 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 175 3e-45 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 175 4e-45 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 172 3e-44 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 167 7e-43 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 162 2e-41 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 175 bits (444), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 9/243 (3%) Query: 2 IEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLD 61 IE++ + ++FGN A+ NV L GE+ ++G SG GK+TL+R + L +P G+++LD Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLEL----AGKSKAQIAAKV 117 G+D SA +RE R +G +FQH+ L +V++NIA L + S++QI KV Sbjct: 63 GEDA---SARHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 118 EPLLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILD 177 LLELV L L DRYP Q+SGGQ+QR+ +ARALA +P+VLL DE ALD + + + Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 LLRKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALI 237 LR+++ +L +T + +TH E ++ D++ +M G V + G +V+ P + Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 238 GDV 240 G+V Sbjct: 238 GNV 240 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 139/238 (58%), Gaps = 5/238 (2%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 ++EI+ +T+RFG+ V N+ LSI GE F ++G SG GK+TL+R + + P +G+I+L Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAQIAAKVEPL 120 DG DLT + Q R + +FQ++ L +V NIA PLE+A KA+I KV+ Sbjct: 63 DGVDLTGVPPEQ-----RPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEA 117 Query: 121 LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLR 180 LE V LT RYP ++SGGQ+QRV IARAL PK+LL DE SALD + + L Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 KINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIG 238 + +E+G+T + +TH + R+AVM GQV + E ++ PR IG Sbjct: 178 NLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIG 235 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 143/239 (59%), Gaps = 3/239 (1%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 +I I V + +G+ + ++ + + + GE+ IIG+SG+GKSTL+R +N L G I + Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIAL-PLELAGKSKAQIAAKVEP 119 G L S +LR R +GMIFQ FNL SV NI + P+ + G S+ A Sbjct: 63 AGSHLGK-SELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMK 121 Query: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLL 179 LE VGL+ D +P Q+SGGQ+QRV IARAL+ +P+ LL DE TSALDPE +L+++ Sbjct: 122 NLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVV 181 Query: 180 RKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIG 238 R + E G+T++++TH+M +++CDRV M G+V E G ++F P + +G Sbjct: 182 RGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLG 239 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 167 bits (424), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 135/231 (58%), Gaps = 4/231 (1%) Query: 14 VEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSASQL 73 V AV V S+ KG+ GI+G SG GKST R + L P SG ++ DG+ + + Sbjct: 44 VHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDSGSMIFDGEGVAEFGGIEF 103 Query: 74 REARRGIGMIFQ-HFNLLSSR-SVYDNIALPLELAGKSKAQIAAKVEPLLELVGLTA--L 129 +E RR + M+FQ F L+ R ++ + +A + G SKAQ + LL VGL Sbjct: 104 KEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHGVSKAQATERAHALLARVGLQPEQF 163 Query: 130 RDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLRKINQELGLT 189 RYP ++SGGQ+QRV IARALA +P++++ DEA +ALD +L+LL+++ E LT Sbjct: 164 ASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELKAEHDLT 223 Query: 190 IVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGDV 240 + I+H + V+ I D V VM GQV+E G V +++ RH TRAL+ V Sbjct: 224 YLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAV 274 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 144/242 (59%), Gaps = 3/242 (1%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 MIE+ V++ +GN + + + + KG++ + G SG+GKSTL++T+N L G+I + Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALP-LELAGKSKAQIAAKVEP 119 DG + + L R IGM+FQ+F L S+ +N+ L +++ +S + Sbjct: 61 DGISVGD-PKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLK 119 Query: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLL 179 L+ VGL A +D++P Q+SGGQ+QRV IARAL+ DP +L DE TSALDPE +LD++ Sbjct: 120 YLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVM 179 Query: 180 RKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGD 239 + QE G+T++++TH+M K++ +RV M+ G ++E E F R + R + Sbjct: 180 VGLAQE-GMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLAK 238 Query: 240 VI 241 +I Sbjct: 239 II 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 738,223 Number of extensions: 29406 Number of successful extensions: 316 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 69 Length of query: 345 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 261 Effective length of database: 910,473 Effective search space: 237633453 Effective search space used: 237633453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)