BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0783.p (476 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980367|ref|YP_001352036.1| major facilitator superfamily d... 140 2e-34 gi|152982562|ref|YP_001352191.1| major facilitator superfamily d... 135 6e-33 gi|152982183|ref|YP_001354785.1| major facilitator transporter [... 127 2e-30 gi|152982526|ref|YP_001355122.1| major facilitator superfamily d... 123 3e-29 gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 107 1e-24 >gi|152980367|ref|YP_001352036.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 478 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 133/417 (31%), Positives = 213/417 (51%), Gaps = 22/417 (5%) Query: 33 LAIGFVMAMLDVTVVNVGLSSIASSLDAPLATLVWIVDGYTLTFAAMLLVGGALADRFGA 92 +AI M LD T++N + S+A+SL +L +V Y L A + + G +ADRFG Sbjct: 24 VAIALFMEQLDSTIINTAIPSMAASLHVTPLSLKAVVSSYILALAVSIPISGWMADRFGT 83 Query: 93 RRLYLTGLLLFVLASLLCGAAPNGPFLIAARLLQGLGAAFFMP-SSLSLLTHVYEDDRVR 151 RR++ + LF +S+LCG + N P L+AAR+LQG AA MP L+++ + + + Sbjct: 84 RRVFSVAVGLFTFSSILCGLSVNVPMLVAARILQGFSAAMMMPVGRLTVIRTFPKSELLA 143 Query: 152 ARMLGVWSATVGLAAAVGPLVGGVLIHWLGWRSVFLINVPVGLVGLLMARKLIPQVAGHA 211 A + A +G +GP VGG+++HWL W+++F +NVP+GL M + +P + Sbjct: 144 AMNFVIIPALIG--PLLGPTVGGLIVHWLPWQAIFFVNVPIGLAAQWMIHRHMPDYRSDS 201 Query: 212 -RALHLFSHLAGVVM----LAALSFVL-IQGPVY-GWISPRILVGLAVAVLAAVALVRHE 264 R L + G+V+ +A LS++L I G Y S IL +++A+L A L H Sbjct: 202 PRPLDVI----GLVLFGSGVALLSWILEIFGEHYLDATSTTILFIISLALLGAYIL--HA 255 Query: 265 LRGIAPLLPRALFATPQFAAANGIGFLINFGVYGNLFYLALFLQQGRGADALQTGLQLVP 324 R + PLL LF T F + GF+ GV G F L L Q G G A Q+GL ++P Sbjct: 256 RRTLHPLLQLTLFKTRTFRVSVVGGFITRLGVGGLPFLLPLLYQLGLGLPAWQSGLMMMP 315 Query: 325 MMAVIFFGNLMSGRMSAHWGPRVPLLLG-LSVGAAFTAVAISFRPETPYWILALVCAAAN 383 A L+S R+ H+G R L++ + +G + +I P TP ++ L+ A Sbjct: 316 TAAAAMAMKLISVRVLGHFGYRKVLIVNTVMIGVTISLFSI-ITPSTPIAVILLLGLAQG 374 Query: 384 LGVSTAIPAMTTVVMQVAGKAHANSAAAALNANRQIGALVGVALMGAILHSVQAWSL 440 S +M ++ ++ A+ ++ +Q+ G+A G+I + AW L Sbjct: 375 FFNSLQFSSMNSMAYSDINPEDSSMASTIASSMQQMSMSFGLAF-GSI---IAAWYL 427 >gi|152982562|ref|YP_001352191.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 518 Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 210/416 (50%), Gaps = 22/416 (5%) Query: 28 LPLVALAIGFVMAMLDVTVVNVGLSSIASSLDAPLATLVWIVDGYTLTFAAMLLVGGALA 87 L L +++ ++ ++D+TV+ L + + L A + +WIV+ Y LT + +LL G L Sbjct: 22 LVLAIVSVALLLIVVDMTVLYAALPRLTADLTASASAKLWIVNIYALTVSGLLLGMGTLG 81 Query: 88 DRFGARRLYLTGLLLFVLASLLCGAAPNGPFLIAARLLQGLGAAFFMPSSLSLLTHVYED 147 DR G + L++ GL++F +ASL +P+ LIA+R L +GAA MP++LS++ + D Sbjct: 82 DRLGHKSLFIAGLVVFGIASLCAAYSPSSATLIASRALLAVGAAMMMPATLSIIRLAFAD 141 Query: 148 DRVRARMLGVWSATVGLAAAVGPLVGGVLIHWLGWRSVFLINVPVGLVGLLMARKLIPQ- 206 + RA +G+W++ AA+GP+VGG+L+ + W SVFLINVP+ LV L +A IP+ Sbjct: 142 ENERAVAIGIWASVAFGGAALGPVVGGLLLEYFWWGSVFLINVPIVLVALPIALAYIPKG 201 Query: 207 VAGHARALHLFSHLAGVVMLAALSFVLIQG----PVYGWISPRILVGL-AVAVLAAVALV 261 A R L L + L +++ L + P +G +LVG+ +AV A Sbjct: 202 KANKTRPWDLIGSLQIMAGLVGVTYALKEAGKREPAWGIALLVLLVGIFFLAVFA----- 256 Query: 262 RHELRGIAPLLPRALFATPQFAAANGIGFLINFGVYGNLFYLALFLQQGRGADALQTGLQ 321 R + P++ +LF F+++ + + G LQ LQ G+ Sbjct: 257 RRQQHSAHPMIDFSLFKNTIFSSSVAAAVVAAAALLGMELVFTQRLQLVLDMTPLQAGVF 316 Query: 322 LVPMMAVIFFGNLMSGRM-----SAHWGPRVPLLLGLSVGAAFTAVAISFRPETPYWILA 376 ++P+ F ++GR+ SA+ L+ GL +GA F + WI Sbjct: 317 ILPLSLAAFVAGPLTGRVLPRLGSAYVLSLSLLISGLGMGAYL------FLYDAAAWIQI 370 Query: 377 LVCAAANLGVSTAIPAMTTVVMQVAGKAHANSAAAALNANRQIGALVGVALMGAIL 432 + G+ A+ A + +MQ A A AA+ + ++G++ GV LMG+IL Sbjct: 371 ICLLVLGAGIGAAMTAASGTIMQSAPVDRAGMAASVEEVSYELGSVFGVTLMGSIL 426 >gi|152982183|ref|YP_001354785.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 469 Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 122/402 (30%), Positives = 190/402 (47%), Gaps = 8/402 (1%) Query: 30 LVALAIGFVMAMLDVTVVNVGLSSIASSLDAPLATLVWIVDGYTLTFAAMLLVGGALADR 89 +V++AIG MA LD + N L ++A L+A A VWIV+ Y L A LL AL + Sbjct: 33 IVSVAIGVGMASLDTAIANTALPAMAMQLNATPADSVWIVNIYQLAMVATLLPFAALGEI 92 Query: 90 FGARRLYLTGLLLFVLASLLCGAAPNGPFLIAARLLQGLGAAFFMPSSLSLLTHVYEDDR 149 G RR+ + GLLLF ASL C A + P L+ AR QG+GA+ M + +LL +Y R Sbjct: 93 LGYRRIAIFGLLLFTAASLACAYAWSLPTLVIARFFQGVGASAIMGVNTALLRSIYP-AR 151 Query: 150 VRARMLGVWSATVGLAAAVGPLVGGVLIHWLGWRSVFLINVPVGLVGLLMARKLIPQVAG 209 + R LG + V +A AVGP +++ W +F INVP+GL +ARK++P Sbjct: 152 MLGRGLGTNALVVAVAFAVGPTTASLILSVWSWPWLFAINVPLGLFAYFLARKVLPHT-- 209 Query: 210 HARALHLFSHLAGVVMLAALSFVLIQGPVYGWISPRILVGLAV--AVLAAVALVRHELRG 267 RA H F L + +++ +S V L + A++ + L+R + Sbjct: 210 -KRATHKFDALTAIYNAGGFGLLILAIGEGAHLSDAKTVALELFGALVFFILLLRRQKGH 268 Query: 268 IAPLLPRALFATPQFAAANGIGFLINFGVYGNLF-YLALFLQQGRGADALQTGLQLVPMM 326 AP+LP LF P F + + + F F L + + G A++TG + P Sbjct: 269 AAPMLPVDLFRRPLF-TLSALTAVCTFAAQSLAFVSLPFYFETVLGRSAIETGFLITPWA 327 Query: 327 AVIFFGNLMSGRMSAHWGPRVPLLLGLSVGAAFTAVAISFRPETPYWILALVCAAANLGV 386 ++ ++GR+S H+ P + +GLSV +A I P+ + + A +G Sbjct: 328 VMVGIMAPIAGRLSDHYPPGMLGGVGLSVLSAGMVSLILMSPDVSVFGICWRMALCGIGF 387 Query: 387 STAIPAMTTVVMQVAGKAHANSAAAALNANRQIGALVGVALM 428 +M A SA+ + +R +G G AL+ Sbjct: 388 GFFQAPNLRAIMSSAPPERGGSASGVVATSRLLGQASGAALV 429 >gi|152982526|ref|YP_001355122.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 481 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/418 (28%), Positives = 206/418 (49%), Gaps = 12/418 (2%) Query: 22 GHRAGMLPLVALAIGFVMAMLDVTVVNVGLSSIASSLDAPLATLVWIVDGYTLTFAAMLL 81 G R L L+ IG V A+L T+VNV + ++ W+ G+ L +L Sbjct: 14 GARYKWLVLLTCMIGSVAAILSSTIVNVAIPDLSRYFVLGQERAQWVSTGFMLAMTLSML 73 Query: 82 VGGALADRFGARRLYLTGLLLFVLASLLCGAAPNGPFLIAARLLQGLGAAFFMPSSLSLL 141 + L RFG RR Y + L ++ ++ G + N P L++ R+L+GL + P ++ Sbjct: 74 LTPWLLLRFGLRRTYGGAICLLLIGGVVGGFSINYPMLLSMRVLEGLASGVMQPIPAIVI 133 Query: 142 THVYEDDRVRARMLGVWSATVGLAAAVGPLVGGVLIHWLGWRSVFLINVPVGLVGLLMAR 201 + D + + +G++ V LA AVGP VGG L+ GWRS+F + VP LV L++ + Sbjct: 134 LRAF-DQHEQGKAMGIFGFGVVLAPAVGPSVGGFLVELFGWRSIFFVVVPPCLVVLVLIQ 192 Query: 202 KLIPQ---VAGHARALHLFSHL-AGVVMLAALSFVL-IQGPVYGWISPRILVGLAVAVLA 256 + + V + L L GV +++ L+ V+ ++G + P+ +V L + V Sbjct: 193 RFLASYTPVPDSDKPLDWKGLLLIGVSIVSLLNGVVELRGDM-----PQAVVLLVIGVAT 247 Query: 257 AVALVRHELRGIA-PLLPRALFATPQFAAANGIGFLINFGVYGNLFYLALFLQQGRGADA 315 + + ++ R A PL+ LF QFA + F+ G++G+ + L +++Q G Sbjct: 248 LIGFILYQTRTSAEPLMNMQLFRHRQFAMGALVAFIYGMGLFGSTYLLPIYMQMGMNYAP 307 Query: 316 LQTGLQLVPMMAVIFFGNLMSGRMSAHWGPRVPLLLGLSVGAAFTAVAISFRPETPYWIL 375 Q GL L+P V+ ++GR++ + P V + +GL + AA A+ + P T Y L Sbjct: 308 SQAGLVLLPAGIVLAVTIPLAGRLADRYPPNVLVAIGLFLLAASFALMANGSPATSYLAL 367 Query: 376 ALVCAAANLGVSTAIPAMTTVVMQVAGKAHANSAAAALNANRQIGALVGVALMGAILH 433 +G+ +PA++ M+ A+A+N RQ+G +GV+L+G +L Sbjct: 368 MAWAVIGRIGLGFVLPALSLGAMRGLDIGLVAQGASAINFVRQLGGAIGVSLVGVVLE 425 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/318 (30%), Positives = 155/318 (48%), Gaps = 15/318 (4%) Query: 16 VVPASSGHRAGMLPLV----ALAIGFVMAMLDVTVVNVGLSSIASSLDAPLATLVWIVDG 71 VVP SG PL+ AL++ M +LD ++ NV + +I+ L W++ Sbjct: 8 VVPPLSGT-----PLIVGTLALSLAVFMNVLDSSIANVSIPAISGDLGVSPQQGTWVITS 62 Query: 72 YTLTFAAMLLVGGALADRFGARRLYLTGLLLFVLASLLCGAAPNGPFLIAARLLQGLGAA 131 +++ A + + G L R G RL++ +LLFVLAS LCG AP+ LIAAR+LQG A Sbjct: 63 FSVANAISVPLTGWLTQRIGQVRLFIGSILLFVLASCLCGFAPSIEILIAARVLQGAVAG 122 Query: 132 FFMPSSLSLLTHVYEDDRVRARMLGVWSATVGLAAAVGPLVGGVLIHWLGWRSVFLINVP 191 +P S +LL Y + L W T +A +GPL+GG + W +F IN+P Sbjct: 123 PMIPLSQALLLSSYPPAK-SGMALAFWGMTTLVAPIMGPLLGGWISDNYTWPWIFFINIP 181 Query: 192 VGLVGLLMARKLIPQVAGHARALHL--FSHLAGVVMLAALSFVLIQGPVYGWI-SPRILV 248 +GL + + L + + V+ + +L +L +G W S I++ Sbjct: 182 IGLFAAWATWSIYKERESRTYKLPIDKVGLVLLVLWVGSLQLMLDKGKELDWFHSGEIII 241 Query: 249 GLAVAVLAAVALVRHELRGIAPLLPRALFATPQFAAANGIGFLINFGV-YGNLFYLALFL 307 +VAV+A + V E+ P++ +LF F+ I + +G+ +G+L L L+L Sbjct: 242 LASVAVVAFIYFVIWEIGEEHPVVDLSLFKGRNFSGGV-IAISVAYGLFFGSLVILPLWL 300 Query: 308 QQGRGADALQTGLQLVPM 325 Q G A + G + P+ Sbjct: 301 QTQIGYTATEAGKVMAPV 318 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,006,682 Number of extensions: 39893 Number of successful extensions: 309 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 16 Length of query: 476 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 389 Effective length of database: 899,382 Effective search space: 349859598 Effective search space used: 349859598 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)