BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0782.p (290 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 152 3e-38 gi|152983030|ref|YP_001352585.1| LysR family transcriptional reg... 86 3e-18 gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 76 2e-15 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 76 3e-15 gi|152981603|ref|YP_001353709.1| LysR family transcriptional reg... 75 5e-15 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 147/283 (51%), Gaps = 6/283 (2%) Query: 1 VDWDNARIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPA 60 ++W + R+FLAI R GTL AA +L Q T+GRRL ALE+++G +LF R SG++ T Sbjct: 2 MEWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDE 61 Query: 61 GELAGAAASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNI 120 G A +M AE QRQ+ G D++L G++R+ ++D + L P L + HP + Sbjct: 62 GAAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRV 121 Query: 121 KVVLSTSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPG 180 + L T ++ +L +READ+A R D D+ AR L + G+YAAK + P+ G Sbjct: 122 TIELLTDARVFSLARREADLAFRIQPFDEADVAARKLLHMPYGLYAAKGMAR----PQAG 177 Query: 181 TGLKGHDVVIYPRSVSPVKSEQISGESITHANVAMEVSTGLVMYDCLQAGVGIGELPTHM 240 G G +V + + HA +A+ + V G G+ LP + Sbjct: 178 DG-AGSMLVTMDTAFDGAPDAVWLKRLLPHAQIALRSNNRDVQAQMCAHGAGLAVLPRLL 236 Query: 241 GDKASGLVRIWPQRATP-YDMWLVLHSDLNRTARVRAVADAII 282 GDK GL + A P D WL H DL + AR+R++ D +I Sbjct: 237 GDKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLI 279 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 21/294 (7%) Query: 7 RIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGA 66 ++F+ + G+ A + D Q+ V +++AALE+ LG RL RT T GE Sbjct: 8 KVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTEEGERYFE 67 Query: 67 AASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKVVLST 126 ++ + + ++Q +++L G +R+AA+ R LMP +Q EH +K+ L Sbjct: 68 QLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRGVKIDLRL 127 Query: 127 STQLTNLTKREADIAVRTVRPDAPD--LIARHLKRLYTGIYAAKAYVKK--RGLPEPGT- 181 +L ++ D+AVR D PD LIAR + + A ++Y++ +G P T Sbjct: 128 HDGFIDLVEQGIDVAVRL--GDLPDSSLIARRVGTASRMLMAHRSYLRSLPKGTKTPITP 185 Query: 182 -GLKGHDVVIYPR---------SVSPVKSEQISGESITHANVAMEVSTGLVMYDCLQAGV 231 L H+ ++Y P + I I ++ ++ V+ + G+ Sbjct: 186 DDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRASILGGM 245 Query: 232 GIGELPTHMGDK--ASGLV-RIWPQRAT-PYDMWLVLHSDLNRTARVRAVADAI 281 GI PT + +K ASG V RI P T P + LV + +A+V+A A+ + Sbjct: 246 GITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEHV 299 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 132/285 (46%), Gaps = 8/285 (2%) Query: 7 RIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGA 66 ++F+ + G+ AA+QLD+ + V R LA LE+ GARL RT T AG Sbjct: 8 QVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGAEMLP 67 Query: 67 AASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKVVLST 126 QM + A ++ + ++ G++R+ + + L A+ + +P + V + Sbjct: 68 RCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTVDMLV 127 Query: 127 STQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPGTGLKGH 186 ++ NL + D+A+R + P+LIAR L + + AA AY+ + G P L H Sbjct: 128 LDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQLVLH 187 Query: 187 DVVI--YPRSVSPVKSEQISGESITHANVAMEVSTGLVMYDCLQAGVGIGELPTHMGD-- 242 + + Y SV ++ +++ N++ ++ L+ AG GI LPT + Sbjct: 188 NCLTHSYYGSVWLLERDKLPVNVAVKGNISANDASSLL--PAALAGAGIAMLPTFLAAPY 245 Query: 243 -KASGLVRIWPQ-RATPYDMWLVLHSDLNRTARVRAVADAIIAAF 285 ++ L+ + P+ + ++ V S + A +R + D + A F Sbjct: 246 IRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARF 290 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 6/187 (3%) Query: 8 IFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGELAGAA 67 +F G+ AA + A V R ++ LE LG RLF+RT T G + Sbjct: 15 LFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY--- 71 Query: 68 ASQMEQGAEQL---QRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKVVL 124 Q + QL +RQ+ G + G++R++ Y L+P L RQ +P+++V + Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 125 STSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPGTGLK 184 S + + + D+A+R P +LIAR L+ + AA +Y+K+ G P+ L+ Sbjct: 132 HISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 185 GHDVVIY 191 H+ + + Sbjct: 192 KHECIQF 198 >gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 12/294 (4%) Query: 3 WDNARIFLAIYRVGTLRGAAEQLDIDQATVGRRLAALEKSLGARLFLRTPSGYVPTPAGE 62 + IF+ I + AAE L + +ATV +A LE+ LG+RL RT PT G+ Sbjct: 4 FQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTLDGD 63 Query: 63 LAGAAASQMEQGAEQLQRQMQGLDERLCGVVRLAATDLTARYFLMPALQHLRQEHPNIKV 122 ++ E+ + + G++R+ A +FL+P L +P +++ Sbjct: 64 AYYTRCVRLLTDIEEADGAFRNTAPK--GLLRVGVQGTVAAHFLVPTLPAFFARYPGMEL 121 Query: 123 VLSTSTQLTNLTKREADIAVRTVRPDAPDLIARHLKRLYTGIYAAKAYVKKRGLPEPGTG 182 + S +L +L + D +R P LIAR + L A+ AY+ + G P Sbjct: 122 HMDESDRLVDLVREGIDCVLRGGTPQDSSLIARRIAMLEQVSCASPAYLARYGQPRNIED 181 Query: 183 LKGHDVVIYPRSVS--PVKSEQISGESITHANVAMEVS-TGLVMYD-CLQAGVGIGELPT 238 L H V Y S S P E + + + +S TG +Y C AG+GI ++P Sbjct: 182 LTKHKAVNYISSASGKPFPLEFMVNGRMQSIVLPTAISVTGTKVYTGCALAGLGIVQMPR 241 Query: 239 HMGDKA---SGLVRIWPQRATPYDMWLVLHSDLNR--TARVRAVADAIIAAFEA 287 + ++ L +I P P VL+ NR +AR+R ++ + F+A Sbjct: 242 YHIEQELQDGRLQQILPDTPPPGMPLSVLYPQ-NRQLSARIRVFSEWLQDIFKA 294 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 641,335 Number of extensions: 25669 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 20 Length of query: 290 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 208 Effective length of database: 917,867 Effective search space: 190916336 Effective search space used: 190916336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)