BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0780.p
         (398 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979771|ref|YP_001354349.1| membrane-bound lytic murein tra...   456   e-129

>gi|152979771|ref|YP_001354349.1| membrane-bound lytic murein
           transglycosylase B protein [Janthinobacterium sp.
           Marseille]
          Length = 372

 Score =  456 bits (1173), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/349 (65%), Positives = 261/349 (74%), Gaps = 7/349 (2%)

Query: 53  AAEKKTPKKATQKKASPPAKKKVASAEQG-EFVNFNEWKDVGRFIDEMVERNQFQRSDLN 111
           A+  +T KK      +    KKV    QG EF NF++W DV  FID+MVE+N F +  L 
Sbjct: 26  ASAGETGKKPATASKTTVKAKKVVKPVQGDEFANFSQWSDVSSFIDQMVEKNGFNKQQLQ 85

Query: 112 ALFAQTRYVDTAIQLIKPAPSNKPKNWTAYRTRFVEPVRINAGVDFWNTYGVALARAEAQ 171
           +   QT YVD+AIQL+KPAP  KPKNW AYR RFVEPVRIN GV FWN Y  ALARAEA+
Sbjct: 86  STLNQTHYVDSAIQLMKPAPPGKPKNWAAYRARFVEPVRINGGVAFWNQYADALARAEAK 145

Query: 172 YGVPMEIIVGIIGVETVYGRNTGNFRVMDVLTTLAFDYPNTPNREARMAFFRGELENTLL 231
           YGVP EIIV IIGVETVYGRNTGNFRVMD +TTLAF YP+TPNR ARM +FRGELENTLL
Sbjct: 146 YGVPAEIIVAIIGVETVYGRNTGNFRVMDAITTLAFAYPDTPNRTARMNYFRGELENTLL 205

Query: 232 LAREAGIDPMSLRGSYAGAIGWPQFMPGSIREYAVDFDGDGKIDLRNSPVDAIGSVAHYL 291
            AR+  IDP SL GSYAGAIGWPQFMPGSIR++AVDFDG+G IDLRNSPVDAIGSVA++L
Sbjct: 206 FARDEQIDPFSLLGSYAGAIGWPQFMPGSIRKFAVDFDGNGHIDLRNSPVDAIGSVANFL 265

Query: 292 AVHGWQRGEPVAFPVSVSADNRQWENMLNQGLEAKYSADELHAAGISTPPL---PAGMRF 348
             HGW+ GEP  FP  V      W+  +NQGL AK++  E+  AG++  PL   PA M F
Sbjct: 266 VQHGWRSGEPTVFPAKVDM-TENWQRFINQGLSAKFTLKEMKEAGVT--PLVEPPADMLF 322

Query: 349 GLVDLQNGTGPTEYWIATNNFYAITQYNRSYFYAMSVADLGHAVAVARN 397
           GLVDLQNG  P+EYW+  +NF+AITQYNRS+FYAMSV DL  AV  ARN
Sbjct: 323 GLVDLQNGADPSEYWLGADNFFAITQYNRSFFYAMSVIDLSRAVRAARN 371


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 823,908
Number of extensions: 33608
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 313
Effective length of database: 906,776
Effective search space: 283820888
Effective search space used: 283820888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)