BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0775.p
         (116 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982431|ref|YP_001354352.1| hypothetical protein mma_2662 [...   165   7e-43

>gi|152982431|ref|YP_001354352.1| hypothetical protein mma_2662
           [Janthinobacterium sp. Marseille]
          Length = 105

 Score =  165 bits (417), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 86/91 (94%)

Query: 14  DQVNYDPNHLLDALIEKLHLKNDAALSRALEVAPPVISKIRHRRLPVGASLLIRMHEVSE 73
           DQV YDPNHLLD+LIE+LHLKNDAALSRALEVAPPVISKIRHRRLPVGASLLIRMHEVS+
Sbjct: 9   DQVAYDPNHLLDSLIERLHLKNDAALSRALEVAPPVISKIRHRRLPVGASLLIRMHEVSD 68

Query: 74  LSIRELRELMGDRREKFRISDKQFKPKPGAA 104
           LSIR+LR LMGDRR+KFRISDKQFKPK G  
Sbjct: 69  LSIRDLRILMGDRRDKFRISDKQFKPKEGGV 99


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 200,833
Number of extensions: 6208
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 44
Effective length of database: 954,837
Effective search space: 42012828
Effective search space used: 42012828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)