BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0772.p (550 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 752 0.0 gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 106 4e-24 gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 102 5e-23 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/546 (69%), Positives = 434/546 (79%), Gaps = 4/546 (0%) Query: 3 THDISNQAPDLCDYNLYRNDAALVEAVQREGAHWHDCTLASQGEALGTAEMSELAALANQ 62 TH++SNQ P+L DYNL+ D+ LV A++ A W+ LA+ G ALGT E +L LANQ Sbjct: 5 THEVSNQVPELLDYNLFSCDSVLVTAIKNSAASWYAPELAALGAALGTRETLQLGQLANQ 64 Query: 63 HSPVLRTHDRTGHRIDVVDFHPAWHTLLEQLRRAGLHALPWMQPGDGAHAARAAGYFLHA 122 H P L+THDR G+RID VDFHP+WH LL RRA LHALPW QP GAH AR A Y+L A Sbjct: 65 HLPELQTHDRFGNRIDRVDFHPSWHQLLAMQRRASLHALPWSQPRAGAHIARTAAYYLQA 124 Query: 123 QVEAGSLCPTTMTFAAIPVLQQEAALFAQLRTRLFSREHDGRDLPMMHKRSILIGMGMTE 182 QVE+GSLCP TMTFAAIP+LQQE ALFA L+ +LFS HD RDLP+ K S+L+GMGMTE Sbjct: 125 QVESGSLCPVTMTFAAIPLLQQEPALFATLKDKLFSTGHDERDLPLPDKASMLVGMGMTE 184 Query: 183 KQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCDAHLMLARTENGLSCFFV 242 KQGGSDVRSN +VA P ++ GRG Y LTGHKWFFSAPMCDAHL+LARTE GLSCFFV Sbjct: 185 KQGGSDVRSNTTVARPLES--AGRGQPYALTGHKWFFSAPMCDAHLVLARTEAGLSCFFV 242 Query: 243 PRWLPDGKRNPVLIQRLKDKLGNRSNSSSEVEFEEALGIMVGEDGRGIPTIIEMANHTRL 302 PRW PDG +N +LIQRLKDKLGNRSNSSSEVEF++A G+MVGEDGRGIPTIIEMANHTRL Sbjct: 243 PRWRPDGSKNAILIQRLKDKLGNRSNSSSEVEFQDAYGVMVGEDGRGIPTIIEMANHTRL 302 Query: 303 DCVIGSTALMRQALVQAIHHARHRNAFGRLLAEQPLMRAVLADLALESEAATMLMLRLAH 362 DCVIGST LMR ALVQAIHHARHR+AFG LAEQ LM+ VLADLALESEAAT LMLRLA Sbjct: 303 DCVIGSTGLMRNALVQAIHHARHRHAFGLPLAEQALMQNVLADLALESEAATRLMLRLAQ 362 Query: 363 AFDAPDDPLQRAWKRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPV 422 A +A DDP++RAW+R+VTPAAKFWICKRALEFTGECMEVWGGNGYVE PMAR+YREAPV Sbjct: 363 AAEAIDDPVERAWRRVVTPAAKFWICKRALEFTGECMEVWGGNGYVENAPMARMYREAPV 422 Query: 423 NSIWEGSGNVMCLDVLRAIEHETEGFALLLMALDDAAAVHPALAQRVRDLKQWLAAPEEQ 482 NSIWEGSGNVMCLDVLRAI E + F LLL AL D A L + + +L+ LA P Q Sbjct: 423 NSIWEGSGNVMCLDVLRAIAKEADAFKLLLDALLDIAKEDKGLRELIAELRTDLALPATQ 482 Query: 483 RQAGARRLVQQLVLALQMMLMLRHAPGESAEAFLASRCDRDGGRVYGTLAVTSLAAQQAI 542 ++ ARR Q+LVL Q LML+ AP A+AF++SR D + GRVYGTLA LAA++ I Sbjct: 483 QEMQARRFTQRLVLVAQSCLMLQAAPANIADAFISSRLDAESGRVYGTLAA-PLAAKE-I 540 Query: 543 LQRAWP 548 L+RAWP Sbjct: 541 LERAWP 546 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 40/295 (13%) Query: 178 MGMTEKQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCD-----AHLMLAR 232 M +TE Q GSD+ S A+P QG G Y ++G K F + D HL+LAR Sbjct: 161 MNLTEPQAGSDLALVRSRAVP-----QGDGT-YKISGTKIFITYGEHDMAENIIHLVLAR 214 Query: 233 TEN------GLSCFFVPRWLPD-----GKRNPVLIQRLKDKLGNRSNSSSEVEFEE---A 278 T + G+S F VP++L + G+RN ++ KLG +++ ++ ++F + A Sbjct: 215 TPDAPEGVKGISLFLVPKFLVNEDGSLGERNDAFCVSIEHKLGIKASPTAVLQFGDHGGA 274 Query: 279 LGIMVGEDGRGIPTIIEMANHTRLDCVIGSTALMRQALVQAIHHARHR--------NAFG 330 +G ++G++ RG+ T+ M N R I ++ +A +A+ +A+ R +A Sbjct: 275 IGTLIGQENRGLETMFIMMNAARFAVGIQGISVAERAYQKAVAYAKDRVQSKDLEGSATA 334 Query: 331 RLLAEQPLMRAVLADLALESEAATMLMLRLAHAFDAP----DDPL---QRAWKRIVTPAA 383 + QP +R +L + + EAA L A AFD D+ + Q+A+ + P Sbjct: 335 VSIIHQPDVRRMLMSMRAQIEAARALAYVGASAFDIAHHHGDEKVRDAQQAFYEFLVPII 394 Query: 384 KFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPVNSIWEGSGNVMCLDVL 438 K W + +++ +++ GG G++E A+ YR+A + +I+EG+ + D++ Sbjct: 395 KGWSTEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTIYEGTTAIQANDLV 449 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 41/296 (13%) Query: 178 MGMTEKQGGSDVRSNASVAMPADALQQGRGAAYLLTGHKWFFSAPMCDA-----HLMLAR 232 M +TE Q G+D+ S A P Q G+ Y +TG K F SA D HL+LAR Sbjct: 165 MCLTEAQCGTDLGLLRSKAEP-----QADGS-YKITGSKIFISAGEHDMAANILHLVLAR 218 Query: 233 TEN------GLSCFFVPRWLPD-----GKRNPVLIQRLKDKLGNRSNSSSEVEFEEALGI 281 + G+S F VP++LPD G RNP+ L++K+G N++ ++ + A G Sbjct: 219 LPDAPEGTKGISLFIVPKFLPDAAGKLGARNPIFCGALEEKMGIHGNATCQMNIDGATGW 278 Query: 282 MVGEDGRGIPTIIEMANHTRLDCVIGSTALMRQALVQAIHHARHRNAFGRLLAEQ----- 336 ++GE +G+ + M N RL + S L A A+ +A+ R L + Sbjct: 279 LIGEPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALVYAKDRLQMRSLTGPKATDKP 338 Query: 337 -------PLMRAVLADLALESEA----ATMLMLRLAHAFDAPDDPLQ-RAWKRI--VTPA 382 P +R +L +E ++ + L++ + PD+ ++ A + +TP Sbjct: 339 ADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQIDKELNHPDEAVRAEAVDEVALLTPI 398 Query: 383 AKFWICKRALEFTGECMEVWGGNGYVETGPMARLYREAPVNSIWEGSGNVMCLDVL 438 K ++ T E M+V+GG+G++ M + R++ +N I+EG+ + LD+L Sbjct: 399 IKAFLTDNGWISTSEAMQVYGGHGFISEWGMEQYVRDSRINMIYEGTNTIQSLDLL 454 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,258,021 Number of extensions: 51211 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 3 Length of query: 550 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 462 Effective length of database: 895,685 Effective search space: 413806470 Effective search space used: 413806470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)