BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0769.p (274 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982248|ref|YP_001354010.1| AraC family transcriptional reg... 192 2e-50 gi|152980647|ref|YP_001352738.1| AraC family transcriptional reg... 145 2e-36 gi|152982202|ref|YP_001353604.1| AraC family transcriptional reg... 140 1e-34 gi|152982321|ref|YP_001353346.1| AraC family transcriptional reg... 131 5e-32 >gi|152982248|ref|YP_001354010.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 263 Score = 192 bits (487), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 102/253 (40%), Positives = 147/253 (58%), Gaps = 4/253 (1%) Query: 11 SAEVDAFQHLGRAVVAFARELAYRDLLRAHSHRRGQLLYAVEGVMQVRTPQGVWMVPPQR 70 S + +QH+ R AR+LA L+ H H RGQL+YA G + V T G W+VPPQR Sbjct: 5 SENREDYQHIERPAGGMARDLANHHLIDYHQHPRGQLIYAYSGAILVMTELGSWVVPPQR 64 Query: 71 ALWVPPQVEHEIRMLSKVSMRTLYI--GEVEGQVIGAQCRLLEVSVLLRELILALLAEPR 128 A+WVPP + H ++ V MRT+Y+ + ++ G C ++ V LLRELI A++ P Sbjct: 65 AVWVPPGMMHSMQACGNVEMRTVYVRPDHIPPELTG--CCVVSVPPLLRELIAAMVHIPL 122 Query: 129 DYAPHSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILADPGRQFSLADWAGL 188 Y R G + +L+L E+ + + +P P D RL IC+ IL +P + ++ +W+ Sbjct: 123 HYDEAGRDGLLVQLLLHEIKPLQVVRLHLPMPSDPRLAKICQRILNEPSDETTVDEWSKF 182 Query: 189 GGASVRTVIRLFPRETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSSM 248 GAS RT++RLFP +TGL F W QQ L A+ LA V +A LGY S SAFS+M Sbjct: 183 IGASARTIVRLFPEQTGLTFSQWKQQARLLAAIQMLATNKNVTDIALQLGYESPSAFSAM 242 Query: 249 FRKALRSTPNQYL 261 F++A+ TP +Y Sbjct: 243 FKRAIGLTPTEYF 255 >gi|152980647|ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 259 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 40 HSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVE 99 H HR+GQL+ A+ G + P G+WMVPPQ +W+P + H R + + L++ E Sbjct: 36 HMHRKGQLVVALHGGVTCEVPGGLWMVPPQCGVWIPGGMPHSNRATANARLCFLFV-EPG 94 Query: 100 GQVIGAQCRLLEVSVLLRELILALLAEPRDYAPHSRAGHVAELILSELGRAPAIPVAIPW 159 + +C L ++ L+RE+IL L P+ Y P + E++LSEL P + +P Sbjct: 95 AASLPGECATLALTPLIREMILHLADLPQHYPPDGHTAKLVEVLLSELVMMPTEQLHLPV 154 Query: 160 PRDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQVHLSE 219 RL+ I A+ P + ++A+W S RT+ RL ETG+ F W +Q+HL Sbjct: 155 SDHARLRQIASALTQHPDDRSTVAEWGERFAMSERTLARLVLNETGMTFGRWRRQLHLII 214 Query: 220 ALVRLARGDAVGVVAQALGYRSQSAFSSMFRKALRSTPNQYL 261 AL RLA G +V V++ LGY S SAF +MF+KAL +P +Y Sbjct: 215 ALQRLASGASVQRVSEDLGYDSVSAFITMFKKALGKSPARYF 256 >gi|152982202|ref|YP_001353604.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 255 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 143/236 (60%) Query: 26 AFARELAYRDLLRAHSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRML 85 A A + + ++ H H QLLYA+EGV+ V T G W+VPP R +W+ P V+H++ M Sbjct: 19 ALAIDYPHGHVIPPHRHAYAQLLYALEGVLTVETQDGRWVVPPTRGVWLQPDVDHQVSMR 78 Query: 86 SKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELILALLAEPRDYAPHSRAGHVAELILS 145 V MRT+++ + Q +L++ +LLRELI++ ++ + SR H+ L++ Sbjct: 79 GDVKMRTVFVNPTFLPNLPQQSCVLDIPLLLRELIVSAISITPELQVGSRDWHLLHLLVL 138 Query: 146 ELGRAPAIPVAIPWPRDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETG 205 EL P +P+ +P P D RL+ IC+ +A P Q S+A+ A + G S RT RLF RETG Sbjct: 139 ELRSVPVLPLYLPLPADSRLREICQQTMAYPDEQNSVAEQAAILGISTRTFHRLFLRETG 198 Query: 206 LQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSSMFRKALRSTPNQYL 261 +++ HW QQ L AL RLARGD V VA GY SQSAF++MF+K +P+++ Sbjct: 199 MRYGHWRQQARLLLALERLARGDKVIDVALEHGYSSQSAFAAMFKKHFDISPSRFF 254 >gi|152982321|ref|YP_001353346.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 249 Score = 131 bits (329), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 9/233 (3%) Query: 40 HSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVE 99 H HR QLL+A GVMQV TP+G W+VPP RA+W+PP +EH + ML+ + MR L I + Sbjct: 17 HVHREAQLLFASSGVMQVTTPKGHWLVPPARAVWLPPGIEHAVDMLADIEMRALLIQPEQ 76 Query: 100 GQVIGAQCRL-----LEVSVLLRELILALLAEPRDYAPHSRAGHVAELILSELGRAPAIP 154 A RL V LLRE IL D P A + + + A Sbjct: 77 LAQHPAAPRLQSEFVATVGPLLRETILGAFKA--DSHPQRLALLLELALFELVEDEDAR- 133 Query: 155 VAIPWPRDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQ 214 +P P D R + + + ILADP L A GAS RT+ RLFP ET L F+ W Q+ Sbjct: 134 TFMPMPHDARARRVADMILADPANGSELELLAYSAGASARTITRLFPAETNLTFKEWRQR 193 Query: 215 VHLSEALVRLARGD-AVGVVAQALGYRSQSAFSSMFRKALRSTPNQYLPRQEK 266 + A+ L G ++ +A LG+ S ++F FR+ + TP++ + R E Sbjct: 194 ARIMAAVEALGNGQTSIKQLALQLGFSSVASFGHAFRQIMGMTPSEMMRRSES 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 568,856 Number of extensions: 21358 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 4 Length of query: 274 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 192 Effective length of database: 917,867 Effective search space: 176230464 Effective search space used: 176230464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)