BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0764.p
         (493 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   612   e-176

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  612 bits (1577), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/494 (58%), Positives = 374/494 (75%), Gaps = 6/494 (1%)

Query: 3   YLLALDQGTSSSRSIIFDQSGTIVATAQQEFPQIFPQPGWVEHDPMDLWQSQLQTAQRVL 62
           ++LA+DQGT+SSR+I+F+  G I   AQQE+PQIFP+PGWVEHD   +W SQL  A++VL
Sbjct: 4   FILAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANAIWNSQLAVARQVL 63

Query: 63  AQSGIQASELTALGITNQRETTVVWERATGKPVYNAVVWQDRRAEVVCAALRERGLGEAI 122
            ++ + A+++ A+GITNQRETTV+W+R TG+P+ NA+VWQDRR    C  LR  G  +  
Sbjct: 64  KENKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQLRAEGKADLF 123

Query: 123 QNKTGLVLDPYFSGTKLRWILDNVAGLRERAERGELLFGTVDAWLVWNLTGGRLHVSDVS 182
           Q KTGLVLD YFSGTK++W+LD++   R RAERGEL FGT+D+WLV+ L+G   H++D S
Sbjct: 124 QQKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGA--HLTDSS 181

Query: 183 NASRTMLWNIHTGAWDEELLQWLGIPASMLPQVHASSHLFGEIDAAHLGAAVKIGGIAGD 242
           NASRT+L+NIHT  WDEELL    IPAS+LP V ASS +         GA + I GIAGD
Sbjct: 182 NASRTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTELFGAPIAIAGIAGD 241

Query: 243 QQSALFGQACLRPGMAKNTYGTGCFMLLHTGDQCATSHNGLISTAACQVD----AQKQYA 298
           QQ+A FGQAC +PGMAKNTYGTGCFMLL+TG    +SHN L++T    +     AQ  Y 
Sbjct: 242 QQAATFGQACHKPGMAKNTYGTGCFMLLNTGTHAISSHNNLLTTIGWTLGIGKAAQTNYM 301

Query: 299 LEGSVFIGGAVVQWLRDGLKAIKTSTDVEGLACTVEDSGGVVFVPSFTGLGAPYWNPTAK 358
           LEG VF+GGA+VQWLRDGL  I+ S DVE LA +V D+GGVVFVP+F+GLGAPYW+  A+
Sbjct: 302 LEGGVFMGGAIVQWLRDGLGIIQRSADVEALATSVPDNGGVVFVPAFSGLGAPYWDSYAR 361

Query: 359 GAIVGLSRGSTVAHIARAALESIAFQSSALLNAMVRDAVSPITELRVDGGAAANNLLLQF 418
           G I+G++RGS  AHIARAALESIA+QS  LL+AM +DA S   ELRVDGGA+ N+LL+QF
Sbjct: 362 GTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDAQSSSQELRVDGGASRNDLLMQF 421

Query: 419 QADLLGIPVIRPQVTETTALGAAYLAGLATGVYRDVSELSSQWRMERRFEPGITRDEAEE 478
           QAD+L +PVIRP VTETTALGAAYLAGLA   ++   E+++QW+M++RFEP ++ DE E+
Sbjct: 422 QADILNVPVIRPVVTETTALGAAYLAGLAVSFWQSAEEITAQWKMDKRFEPAMSADEREQ 481

Query: 479 RIGAWEAAIRQVRA 492
           R+  W  A+ + +A
Sbjct: 482 RLHTWHRAVERAQA 495


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,124,991
Number of extensions: 46344
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 406
Effective length of database: 899,382
Effective search space: 365149092
Effective search space used: 365149092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)