BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0761.p
         (272 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport...    54   8e-09

>gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport
           system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 259

 Score = 54.3 bits (129), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 1   MNKNQDQSITRVLVMLLYIAFTLIPLYWLLNTSLKTNEETLSVFTLWPNAP----TLDNY 56
           M+K +  SI   L  +L  AF  +PL  ++  S   N+  L       NA     TLD Y
Sbjct: 1   MHKTRPHSIGLTLAAVLVYAFLYVPLAIVVVYSF--NDSRL-------NAEWVGFTLDWY 51

Query: 57  KVIFTDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTP 116
           + +F +        NS+I   +++ +S L+   A +A  RY+    + +   +LT    P
Sbjct: 52  RTLFANEEMLRAAGNSLIIALVSSAVSTLLGTMAGFALHRYKI---RLLQVLVLTPIAIP 108

Query: 117 P---AVFLLPFFQLYS-TIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAY 172
                V LL FF + + T+G+    ++V LAH+ F++     ++   +SG+   + E A 
Sbjct: 109 EILVGVSLLIFFVMLNLTLGM----LSVTLAHIAFSMGFVAIVVRSRLSGMDESLTEAAR 164

Query: 173 IDGFSFPRFFLRIFLPLIKSGVGVTAFFCFMFS 205
             G +  + F R+ LPLI  GV   A   F  S
Sbjct: 165 DCGATPWQAFRRVTLPLIMPGVVAGALMAFTLS 197


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 610,539
Number of extensions: 23102
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 190
Effective length of database: 917,867
Effective search space: 174394730
Effective search space used: 174394730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)