BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0759.p (362 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 168 4e-43 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 157 8e-40 gi|152980121|ref|YP_001354989.1| ABC transport system ATP-bindin... 112 2e-26 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 112 3e-26 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 100 2e-22 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 168 bits (426), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 145/244 (59%), Gaps = 11/244 (4%) Query: 4 IEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSE 63 IE KN+ +G+ AL +++ + G ALLGPSGCGK+TLL II+GL QP Sbjct: 3 IEVKNIQKQFGNF------VALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDH 56 Query: 64 GQVLFDGQDMTRKATRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARVRE- 122 GQVL DG+D + + RER + VFQ L+ M+VF+N+AF LR R A R +++++E Sbjct: 57 GQVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEK 116 Query: 123 ---IAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWEL 179 + E++ L + LS +Q+I+L R L + +L DEP +D ++ EL Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALA-VEPRVLLLDEPFGALDAKVRKEL 175 Query: 180 RQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGY 239 R+ L+ +H L +T I+VTHDQ EAL AD++V+M +G V Q G P+ ++ P FV Sbjct: 176 RRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYG 235 Query: 240 FIGS 243 F+G+ Sbjct: 236 FLGN 239 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 157 bits (398), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 160/304 (52%), Gaps = 24/304 (7%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA +E +NL +G N + +++ E G + LLGPSGCGK+TLL +I+G Sbjct: 1 MALLEIRNLTRRFGDN------TVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDV 54 Query: 61 PSEGQVLFDGQDMTRKATRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 P GQ+L DG D+T +R + VFQ L+ M+V N+AFPL + E+Q +V Sbjct: 55 PDAGQILLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKV 114 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 E E + LT + LS +Q++S+ R LV + +L DEPL+ +D ++ +++ Sbjct: 115 DEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRP-KLLLLDEPLSALDAQLREQMQ 173 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +L + ++ +T IYVTHDQ EAL + + VM +G+V Q +P ++ P FV F Sbjct: 174 IELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADF 233 Query: 241 IGSPGMNFCSLRVEGDAVLLGQQRIQLDAAQLQALK---------NSSGELKLGIRPEFV 291 IG+ C+L +G + + LD + A+K S G + L RPE Sbjct: 234 IGT-----CNL-FDGVVTQIDGNMMWLDVPGMGAVKAFTAPSVTVGSKGTIAL--RPEKT 285 Query: 292 ELAA 295 +++A Sbjct: 286 QVSA 289 >gi|152980121|ref|YP_001354989.1| ABC transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 267 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 20/249 (8%) Query: 4 IEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSE 63 +E ++L AYG P L +NM + G A++G SG GK+T+L +I G L+P Sbjct: 5 VEIRDLHFAYGERPI------LSELNMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLRPQA 58 Query: 64 GQVLFDGQ---DMTRKATRE--RNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQA 118 GQV DGQ ++ KA + R + +FQ L+ +SVF+N+AFPLR E+ Sbjct: 59 GQVTVDGQVVHELDTKAVYQLRRKMGMLFQHGALFTDISVFENVAFPLREHTGLSEEL-- 116 Query: 119 RVREIAEMLDLTRDLKQRA----AGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPH 174 +R++ M T L+ A A +S ++++L R + D I++DEP +DP Sbjct: 117 -IRDLVLMKLHTVGLRNAAQLMPAEISGGMARRVALARS-IALDPELIMYDEPFAGLDPI 174 Query: 175 MKWELRQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDH 234 +++++ L T I V+HD E+ + AD V +++G +V +G P + D Sbjct: 175 SMGMTANLIRKLNDALGSTTILVSHDVHESFSIADYVYFLSKGAIVAEGTPAEMMASSD- 233 Query: 235 TFVGYFIGS 243 +V F+ + Sbjct: 234 PYVKQFVNA 242 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 129/245 (52%), Gaps = 13/245 (5%) Query: 3 RIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPS 62 ++E +G+ GS+ + + ++ + G LLG SGCGK+T+L I+G Sbjct: 12 QLETIRVGYQLGSHMHEI----VHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLI 67 Query: 63 EGQVLFDGQDMTR----KATRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQA 118 G++ G++++ R++ VFQ L+ +SV DN+ F LR AER Sbjct: 68 AGRITLGGKELSNAQHTTVPEARHVGVVFQDYALFPHLSVSDNIGFGLRKLAAAER--NG 125 Query: 119 RVREIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLV-RKDVAAILFDEPLTVIDPHMKW 177 R+ ++ ++ L K+ LS +Q+++L R L + D+ +L DEP + +D ++ Sbjct: 126 RINKLLALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDL--LLLDEPFSNLDVDLRE 183 Query: 178 ELRQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFV 237 L ++++I ++ T + VTHDQ EA AD++ VM +G +VQ + L+ RP + FV Sbjct: 184 RLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFV 243 Query: 238 GYFIG 242 FIG Sbjct: 244 ADFIG 248 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 103/194 (53%), Gaps = 4/194 (2%) Query: 24 ALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQPSEGQVLFDGQDMTRKATRERNI 83 AL+ +N+ G L+G SGCGKSTLL I++G S G G + + ER + Sbjct: 32 ALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGSANMYGMPID-GPSPERGM 90 Query: 84 AQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARVREIAEMLDLTRDLKQRAAGLSAD 143 VFQ L+ ++V +N+ F R R + + +++ +M+ LT+ LS Sbjct: 91 --VFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDMVGLTKFANYYPGQLSGG 148 Query: 144 AKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELRQKLKEIHHQLKLTLIYVTHDQVE 203 KQ++++ R L D +L DEP +D + +L+Q L EI + K+T+++VTH E Sbjct: 149 MKQRVAIARVLA-NDCEVLLMDEPFGALDALTREKLQQDLLEIWERTKVTVVFVTHAVEE 207 Query: 204 ALTFADEVVVMTEG 217 A+ +D VVVMT G Sbjct: 208 AVMLSDRVVVMTAG 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 837,014 Number of extensions: 34004 Number of successful extensions: 280 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 55 Length of query: 362 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 278 Effective length of database: 910,473 Effective search space: 253111494 Effective search space used: 253111494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)