BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0758.p (366 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 176 2e-45 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 159 2e-40 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 132 4e-32 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 106 2e-24 gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase com... 102 5e-23 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 28/304 (9%) Query: 3 LELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 LE++ + + G T + + L + G LLGP+ GKT+L+R+IAG D P AG++L+D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 63 GQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLHI 122 G D+TGV +R + V+Q + +P +TV NIA PL + P+ EI K+V+E E + + Sbjct: 64 GVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRL 123 Query: 123 AHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATG 182 R P ELSGGQ+QR ++ARAL+ R L+LLDEPL LD +LRE+++ ELI+L Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 183 DTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPMNVLE 242 T +Y T + EAL L AVM++G++ QL +++ P S VA Sbjct: 184 GITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADF---------- 233 Query: 243 ATAVSTAPGVAAIRMSDGSVLEIAGRNLQLAEGQPCKLGIRCNDVRLETLAAPGVSLGCR 302 + + DG V +I G + L P ++ AP V++G + Sbjct: 234 ---------IGTCNLFDGVVTQIDGNMMWL--DVPGMGAVKA-------FTAPSVTVGSK 275 Query: 303 VTLA 306 T+A Sbjct: 276 GTIA 279 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 142/239 (59%), Gaps = 4/239 (1%) Query: 1 VTLELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 +++E+K + K G L + L G + LLGP+ GKT+L+RIIAGL++P G+VL Sbjct: 1 MSIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQ----KQPEQEISKRVNEI 116 +DG+D + VRER + V+Q + + +TV+ENIA LR++ + E +I ++V ++ Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKL 120 Query: 117 AEKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELI 176 E + + L R P +LSGGQ+QR ALARAL ++LLDEP LD K+R+ELR L Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 177 SLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFND 235 L T ++ T + +EAL + +M++G + Q+ +++N+PAS V + Sbjct: 181 RLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGN 239 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 132 bits (332), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 130/234 (55%), Gaps = 8/234 (3%) Query: 3 LELKQVAKTVGAQTH--LYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 LE +V +G+ H ++ L L +G I LLG + GKT+++R IAG + AGR+ Sbjct: 13 LETIRVGYQLGSHMHEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRIT 72 Query: 61 VDGQDVTG---VGVRE-RNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEI 116 + G++++ V E R++ +V+Q + +P L+V +NI LR K E + R+N++ Sbjct: 73 LGGKELSNAQHTTVPEARHVGVVFQDYALFPHLSVSDNIGFGLR--KLAAAERNGRINKL 130 Query: 117 AEKLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELI 176 + + ++ P ELSGGQQQR ALARAL + L+LLDEP NLD LRE L SE+ Sbjct: 131 LALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVR 190 Query: 177 SLFATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVA 230 + TT V T + EA + VM +G ++Q L++ PA+ VA Sbjct: 191 DILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVA 244 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 115/211 (54%), Gaps = 7/211 (3%) Query: 3 LELKQVAK--TVGAQT--HLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGR 58 +++K V+K ++G QT L ++L + KG L+G + GK++L+RI+AG + ++G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 59 VLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAE 118 + G + G ER MV+Q + +P LTV ENI R + P+ ++ + + Sbjct: 74 ANMYGMPIDGPS-PER--GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 119 KLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISL 178 + + PG+LSGG +QR A+AR L ++L+DEP LD RE+L+ +L+ + Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 179 FATGDTTVVYATTEPQEALLLGGHTAVMHEG 209 + TVV+ T +EA++L VM G Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152983439|ref|YP_001353228.1| ABC-type transporter ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 102 bits (253), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 9/214 (4%) Query: 6 KQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVDGQD 65 K+VA G T L +D + G ++G + +GK++L+ ++AGLD P+ G V +DG D Sbjct: 18 KRVADATGELTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGTD 77 Query: 66 VTGV------GVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEK 119 + + G+R+ L V+Q F L EN+ PL L+ + + ++ + + Sbjct: 78 IFALDEDGRAGLRKSKLGFVFQSFQLLGHLNALENVMLPLELRG--DGKAKEKAEAMLAR 135 Query: 120 LHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLF 179 + ++ L+ P LSGG+QQR ALARA + PL+ DEP +LD E + + L Sbjct: 136 VGLSTRLKHYPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGEAVIQLMFELN 195 Query: 180 ATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQ 213 +T+V T +P A L T + GRL+Q Sbjct: 196 RERGSTLVLVTHDPSIAALC-KRTITISAGRLVQ 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 818,964 Number of extensions: 33318 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 59 Length of query: 366 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 281 Effective length of database: 906,776 Effective search space: 254804056 Effective search space used: 254804056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)