BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0757.p
         (513 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980663|ref|YP_001355299.1| glycerol-3-phosphate dehydrogen...   610   e-176

>gi|152980663|ref|YP_001355299.1| glycerol-3-phosphate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  610 bits (1574), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 309/511 (60%), Positives = 384/511 (75%), Gaps = 10/511 (1%)

Query: 3   LEYDLLVVGGGINGAGIARDAAGRGLRVLLCEQHDLAQHTSSSSTKLIHGGLRYLEYYEF 62
           L+ D+L+VGGGINGAGIARDAAGRGL V+LCE+ DLA HTSS+STKLIHGGLRYLE YEF
Sbjct: 5   LQCDILIVGGGINGAGIARDAAGRGLSVVLCEKDDLASHTSSASTKLIHGGLRYLENYEF 64

Query: 63  KLVRKALQEREVLLRSAPHIIWPLRFVMPHDASQRPAWMIRAGLFMYDHLAKREILPASE 122
            LVRKAL ERE+LLRSAPHI+ PLRFVMPHD  QRPAWMIRAGLF+YDHLAKRE+LP S 
Sbjct: 65  SLVRKALIEREILLRSAPHIMHPLRFVMPHDKGQRPAWMIRAGLFLYDHLAKRELLPGSH 124

Query: 123 GVNLGRHAAGQPLKGDYRRGFVYSDGWVDDARLVVLNAMDAQEHGARILTRTKCVSARRD 182
           G++L +H+AG PLK ++ +GF YSDGWV+DARLVVLNA+ A E GA ILTRT CV+  R+
Sbjct: 125 GIDLRKHSAGTPLKAEFSKGFAYSDGWVNDARLVVLNAVAAAEKGAHILTRTACVAVTRN 184

Query: 183 GQTWHAVLEHQAAGSVQQEEVRARAIVNAAGPWAARFAQAVPQAKTGRSLRLIKGSHIVV 242
              W A L ++ +  +    V+A+ +VNAAGPWAA F       + G+ LRLIKGSHIVV
Sbjct: 185 ADDWQATLRNKDSEEIL---VKAKLLVNAAGPWAASFLHDTVHGRAGKKLRLIKGSHIVV 241

Query: 243 KRLFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGQVEIDAEEIDYLCQMA 302
           ++LFDHPYAYIFQ+PD RI+FAIPY+++FTLIGTTD++YHGD  +V IDA EIDYLC+++
Sbjct: 242 RKLFDHPYAYIFQHPDGRIVFAIPYEQDFTLIGTTDIDYHGDTDKVSIDAAEIDYLCELS 301

Query: 303 NRYFNRQISKSDVVWTYSGVRPLL----DDSAENASAITRDYLLECDDAGAPMLNVWGGK 358
           N YF + I+  DVVW+YSGVRPL+    DD  E ASA+TRDY L  D   AP+L ++GGK
Sbjct: 302 NHYFKQAINPVDVVWSYSGVRPLVEDETDDDNEKASAVTRDYKLTFDTDAAPLLTIFGGK 361

Query: 359 ITTYRKLAEEALSMLAPHLGASTQPWTAGAPLPGGDLEQAG-KMVARYDFDGWLRQFQAR 417
           ITT+RKLAEEA+ +LAP L      WTA A LPGGD+  A     A  +FD ++R+ Q  
Sbjct: 362 ITTFRKLAEEAVDLLAPVLDNHHGAWTADACLPGGDIYGAQVSNRAVLEFDDYVRELQLE 421

Query: 418 HPWLPAELAHRYARSYGSRVEQFIGQADSLAALGEELSPGLYEAEAHYLVQHEWARSADD 477
           + WLPA L  RYA +YG+R++  +     +A +GE ++PGLY AE  YL ++EWA S +D
Sbjct: 422 YAWLPAALVERYACAYGTRIKLLLAGRTGIADMGEAIAPGLYAAEVEYLTRYEWATSTED 481

Query: 478 ILWRRSKLGLH--SGPQHRGRLEAWLAGLPE 506
           ILWRRSKLGLH     + R +L  WL  L +
Sbjct: 482 ILWRRSKLGLHLAQTNESRRKLNHWLHDLEQ 512


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,228,224
Number of extensions: 52418
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 426
Effective length of database: 899,382
Effective search space: 383136732
Effective search space used: 383136732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)