BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0753.p (251 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 185 2e-48 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 177 4e-46 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 168 2e-43 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 140 8e-35 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 128 3e-31 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 185 bits (470), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/241 (43%), Positives = 150/241 (62%), Gaps = 8/241 (3%) Query: 5 LLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLR 64 +L+++ I V Y GA + ++SL + GEI L+GANGAGKSTTL+A++ L G +R Sbjct: 16 MLKIEEITVRY-GATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIR 74 Query: 65 SGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLRDA 124 +G ++ +SPA+++ G++ EGR F L+V EN+ G R +A +RD Sbjct: 75 -----MNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAY-RRKDKAKVRDD 128 Query: 125 LERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVADI 184 +ER++ FP LR R + +AG SGGEQQM+ I RAL+SRPRL++ DEPS+GLAP +V I Sbjct: 129 MERMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQI 188 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSFYF 244 F+ L R R EG +L+ EQN+ AL R +LENG V QG + +R +I+ Y Sbjct: 189 FS-LIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYL 247 Query: 245 G 245 G Sbjct: 248 G 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 177 bits (450), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 154/246 (62%), Gaps = 6/246 (2%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 M+ +L++ ++V Y G + A++ V L + GE+ L+GANGAGK+TTLKA++ L R Sbjct: 1 MTDTVLKISGLKVAY-GGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCR 59 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 + G I + GQ I +LVR+ LA V EGR F +S++ENLL G R + + Sbjct: 60 VE---GHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGI 116 Query: 121 LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLV 180 D +++ + +FP L+ R +AG SGGEQQM+ + RAL+S P LL+LDEPSMGL+P++ Sbjct: 117 AAD-IDKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIM 175 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQ 240 V IF ++ R +G+ +L+ EQN+ +ALQ A+RA V+E+G + G A+ + ++ Sbjct: 176 VEKIF-EVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVR 234 Query: 241 SFYFGE 246 Y GE Sbjct: 235 EAYLGE 240 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 168 bits (426), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 137/226 (60%), Gaps = 11/226 (4%) Query: 22 LQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLRSGRILFDGQDIARSSPA 81 L +VS+ + PG+I +LGANGAGKST ++++ L R G IL+ G+++A Sbjct: 19 LHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPP-----RQGEILWGGKNLAGEKTH 73 Query: 82 DLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRF--TRRAVLRDALERIYAIFPLLRNRR 139 +++ G++ + EGR F ++V ENL G F + V+RD L R+Y IFP L+ R Sbjct: 74 NIIASGISCIPEGRKVFPRMTVAENLALG---AFLESSSTVVRDRLARVYEIFPRLKERA 130 Query: 140 RSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVADIFAQLSRLNREEGVAL 199 LAG SGGEQ MV IGR L++ P+LLV+DEPS+GL+PL V + F + ++N G+ + Sbjct: 131 AQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQIN-ALGITV 189 Query: 200 LVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSFYFG 245 L+ EQN+ L +H VL G + QG AE L D++S YFG Sbjct: 190 LLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 140 bits (353), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 143/245 (58%), Gaps = 15/245 (6%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 MSA LL++ + Y G L + +T+Q GEI +LLG NGAG+STT+KA ++AA Sbjct: 1 MSA-LLEIKNLHAFY-GKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAA-- 56 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 +G I F G++I + RQGL V E R F +LSV +NL+ G +A Sbjct: 57 ----TGTIRFKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLG------AQAK 106 Query: 121 LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLV 180 R + + +Y +FP L+ R+ AG+ SGGEQQM+ + R L+ P L+++DEP+ GLAP + Sbjct: 107 SRWSADDMYRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQM 166 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQ 240 VA + L L + GV++L+ EQ A+AL+ + R V+ +G V +G + L+ + ++ Sbjct: 167 VALVANFLQELV-QRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVR 225 Query: 241 SFYFG 245 + G Sbjct: 226 QEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 5 LLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLR 64 +LQV+ + Y GA L+ +SL+++ G+ +LLG NG GK+T LK + +L + Sbjct: 1 MLQVNQLNQYY-GAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLP-----VA 54 Query: 65 SGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLRDA 124 +G + DG+DI + P G+A V +GR FA L+VEENLL G + ++A + Sbjct: 55 AGNVSLDGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKG 114 Query: 125 LERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVADI 184 +Y +FP+L+ G SGG+QQ + I RAL++ P+L++LDEP+ G+ P ++ DI Sbjct: 115 --EVYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDI 172 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQG 228 +S L + +L+ EQ A + A VL G V G Sbjct: 173 GRVISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASG 216 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 532,558 Number of extensions: 20885 Number of successful extensions: 260 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 57 Length of query: 251 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 170 Effective length of database: 921,564 Effective search space: 156665880 Effective search space used: 156665880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)