BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0750.p (353 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 94 2e-20 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 82 4e-17 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 79 6e-16 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 75 8e-15 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 57 1e-09 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 166/376 (44%), Gaps = 68/376 (18%) Query: 37 VLPWAASNY------VID-ALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAA 89 V P+ A N+ ++D ALL LAL GLN++ G+AG L LG AF A+GA+ Sbjct: 27 VFPFIAQNFGNSWVRIMDFALLYIMLAL-----GLNVVVGFAGLLDLGYIAFYAIGAYLT 81 Query: 90 -----------------------------YNINLRVGGLPLLL--SIALAGLAATAVGLV 118 + + G+ L L + LA L A G + Sbjct: 82 ALLASPQFAVVLESFVNQYPAIGETLLWVFGPEIAQNGIHLSLWAIVPLAALVAGFFGAL 141 Query: 119 FGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN--DNPSGVIDAPALVVGGISFDTP 176 G P+L+LRG YLA+ TL ++ + + N + P G+ + + G+S + Sbjct: 142 LGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQGINMIDPIRIFGVSLNGE 201 Query: 177 AGR-----------------YLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQAARVI 219 AG Y L + + +S RL ++ G F+A+R++E AA+ + Sbjct: 202 AGSRATVMIGDYAMPSVNAYYFLFLFLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAM 261 Query: 220 GIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIR 279 GI KLLAFA+ + G+AG ++ + V P F+L S+ +L +V++GG+ I Sbjct: 262 GINTRNVKLLAFAMGASFGGIAGAMFA-SFQGFVSPESFSLTESIAVLAMVVLGGMGHIP 320 Query: 280 GAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVL--EMSQRIVLGALIIFFLIVEPQGLAA 337 G LG ++ P +L + L F ++ E+ ++++ G ++ ++ P G Sbjct: 321 GVVLGGIILAALPEVLRHVVEPLQQSLFGEVLIDAEVLRQLLYGLAMVLIMLYRPSG--- 377 Query: 338 LWERARRSLHQRASST 353 LW + A + Sbjct: 378 LWPSPKSEDRPTADND 393 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 146/319 (45%), Gaps = 29/319 (9%) Query: 39 PWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAAYNINLRVGG 98 P S Y + LLIPF A ++ +G NLL GY G LS G + F+A+GA+AA + + G Sbjct: 44 PLFVSQYYM-TLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTG- 101 Query: 99 LPLLLSIALAGLAATAVGLVFGLP----SLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN 154 ++S + L A + +P + R G + + TL+ L KF + + Sbjct: 102 ---MISFEMMLLTAVVASFIISIPIAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITG 158 Query: 155 DNPSGVIDAPALVVGGIS-FDTPA----GRYLFALGIVTVLTLLSWRLVLTQTGHHFIAV 209 + + P+L + FD A Y + L +V +LT + WR+V + G H +A Sbjct: 159 GDSGMRVPRPSLFGMELDQFDKTAFLGGPFYYYCLVMVLLLTWVMWRIVRSPYGIHLMAS 218 Query: 210 RDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFI 269 RDN A +G+ + + +AF +S+ + GV+ G V +P S ++F+ Sbjct: 219 RDNAIKALYLGVKIRSVRAIAFVVSAVYASIGGVILG-VNTGLADPELAYWTHSGHLVFM 277 Query: 270 VIIGGLATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLI 329 ++GG G LGA VF LL L SL Q++ R LGA++ ++ Sbjct: 278 AVLGGYQEFLGPVLGA---FVFILLQDELSSLT--QYW---------RFFLGAILAILVV 323 Query: 330 VEPQGLAALWERARRSLHQ 348 V P G+ + + Q Sbjct: 324 VLPGGIMGAIRKFKSKGEQ 342 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 134/277 (48%), Gaps = 25/277 (9%) Query: 59 LAAVGLNLLTGYAGQLSLGSSAFMAVGAFAA------YNIN-------LRVGGLPLLLSI 105 +AA+ LNLL GY GQLSLG AF +GA+ +++ L V P+ +S Sbjct: 38 IAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDVTLWGMTEPLVVTAKPVWVSF 97 Query: 106 ALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWV-LVKFSWFS-NDNPSGVIDA 163 A A G + G + R+RG Y + T++ F Q + +V +W + P + + Sbjct: 98 ACGIAFAAIAGWLLGKLAFRVRGAYFVIVTIS---FAQVMRMVSLNWVDLTEGPMALNNI 154 Query: 164 PALVV-----GGISFDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQAARV 218 PAL + G I + Y L + V LL +V ++ G IA+R+NE AR Sbjct: 155 PALTMWVPGEGVIDLASKLSTYWLVLAVAVVSYLLVAAIVHSRIGRAMIALRENETLARS 214 Query: 219 IGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATI 278 +GI V +A ++ I G AG L+ +R ++P F ++ ++ +VI+GG T+ Sbjct: 215 VGIRVTHYLGIATIFAAGIAGAAGGLYAHT-VRIIDPDVFMFMFTIMMVIMVIVGGKGTL 273 Query: 279 RGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMS 315 G +G L + P +L + S + QW GVL ++ Sbjct: 274 AGPVVGGLLFGLLPEVLRGVVSPEI-QWMIYGVLMIA 309 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 74.7 bits (182), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 49/350 (14%) Query: 2 TTSFTPYAASAAPKAHPAAQLRRAWPWLLLLVAYGVLPWAASNYVIDALLIPFLALSLAA 61 TT AA++ P L R W L LL V + S++V+ ++ L S A Sbjct: 57 TTQRIEQAAASRPG------LARIWMVLGLLAL--VAAFYDSHFVL-MMICAVLLYSTAC 107 Query: 62 VGLNLLTGYAGQLSLGSSAFMAVGAFAAYNINLRVGGLPLLLSIALAGLAATAVGLVFGL 121 +GL L G+ G + +AF +G++ + G LP L +IA++G+ A +G V L Sbjct: 108 MGLTLQFGFVGVANFAGAAFFGIGSYTTAVLATHTG-LPQLANIAISGVVAAIIGSVLIL 166 Query: 122 PSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSND---NPSGVIDAPALVVGGISFDTPAG 178 P LR RG Y A+ T+A +L K ND P G + P + + G +F+ G Sbjct: 167 PVLRTRGHYAALVTIAFG-----ILFKTFIEVNDVLGGPQG-LQVPGMQLFGHAFNE--G 218 Query: 179 RYLFALG-------IVTVLTLLSWRLVLTQ------TGHHFIAVRDNEQAARVIGIPVLR 225 LF + ++ L + + VL + G VR +E AA G+ + R Sbjct: 219 FTLFGIEFSFYVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFGLHIAR 278 Query: 226 TKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGA 285 K++AF + + G+AG ++G + + + P F SL ++ I I+GGL G A Sbjct: 279 WKVIAFTMGNLFAGIAGSVYGMM-VGFIAPNNFTFSDSLLLVSIAILGGLGNPVGLIPAA 337 Query: 286 ALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGL 335 ++++ P L ++ + ++ AL+I L+ P+GL Sbjct: 338 IIVLMLPEKLQ--------------FIQEYRVLLYAALVIAILLFRPEGL 373 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 120/295 (40%), Gaps = 26/295 (8%) Query: 61 AVGLNLLTGYAGQLSLGSSAFMAVGAFAA-YNINLRVGG---LPLLLSIALAGLAATAVG 116 A+ N+L G G LS G + + +GAF A + INL G +P+ L + G+A G Sbjct: 48 ALSYNMLLGQGGMLSFGHAVYSGLGAFCAIHAINLVAAGNLHIPITLIPLVGGVAGLFFG 107 Query: 117 LVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPALVVG----GIS 172 +FG + R G A+ TL V+ V F VVG GI+ Sbjct: 108 ALFGYVTTRKSGTTFAMITLG---IVELVFACSLMFPGFFGGEGGIFTDRVVGEAFFGIT 164 Query: 173 FDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFA 232 + Y G + + T+ + T G AVRDN + A +G + L Sbjct: 165 YGPQIQVYYLIAGWLLLSTVAMYAFTQTPLGRIINAVRDNPERAEFVGYDPQWVRYLTLM 224 Query: 233 ISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFP 292 +S+F G++G L + V + RS IL IGG A G LGA + V Sbjct: 225 LSAFFAGISGALTA-INFEIVSAENVSALRSGMILLFTFIGGTAFFFGPILGAIVGVFLT 283 Query: 293 LLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALWERARRSLH 347 ++LS + + ++ LG + +++ P G+A L + R L Sbjct: 284 VVLSNYTN--------------AWQLYLGVFFVLIVMLAPGGIAGLLMQFMRLLQ 324 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 705,292 Number of extensions: 27775 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 11 Length of query: 353 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 269 Effective length of database: 910,473 Effective search space: 244917237 Effective search space used: 244917237 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)