BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0749.p (298 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 119 2e-28 gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t... 81 6e-17 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 80 1e-16 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 68 6e-13 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 62 6e-11 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 16/307 (5%) Query: 8 FFAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAA------LTFVSLVEH 61 F + + GL+ G MY+LVA+G+ ++Y ++NFA G L+ A L ++ V Sbjct: 3 IFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAP 62 Query: 62 GIP----FALALLLTLAAMILLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLL 117 +P +A+L + + + + IERV R L N + + +G+S +++ +A ++ Sbjct: 63 DLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAMMI 122 Query: 118 WGTQVHALDLGIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALAD 177 WG + PLH+ +IS + I AA+ + LL TRMG RA ++ Sbjct: 123 WGRSPIPFPQEMPTEPLHIMGALISPTQVMLLILAAVAMGLLVLLIEKTRMGRAMRATSE 182 Query: 178 DSYAALAVGLRLPRILTAVWATAGLIALIAGLLWGARL-GVQFSLSLVV-LKALPVLVLG 235 + A +G+ R++ +A ++A IAG++W A QF++ V LKA VLG Sbjct: 183 NPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLG 242 Query: 236 GFDSILGAIVGGLLIGALEKLAEVYLGPLV----GSGIEGWFAYVAALAFLLVKPSGLFG 291 G +I GA++GG+L+G +E L Y+G L GS + FA+V + L ++PSG+ G Sbjct: 243 GIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGIMG 302 Query: 292 QAALQRA 298 + RA Sbjct: 303 ERVPDRA 309 >gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 81.3 bits (199), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 148/299 (49%), Gaps = 16/299 (5%) Query: 15 GGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLL---FAALTF---VSLVEHGIPFALA 68 GL+ G++Y++VA+GF L + V+ F+ G L+ FA LT V +++ P+ Sbjct: 10 NGLMLGMIYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDISSPWIRL 69 Query: 69 LLLTLAAMI---LLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLW--GTQVH 123 L + L+A+ LLG +I + ++ PL P+ +ATL L V+ +L + G+ Sbjct: 70 LAVVLSAVCVTGLLGAAIAKFLILPLHKAPPLNTLLATLMLGTVMRESVRLFYPDGSNSK 129 Query: 124 ALDLGIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSYAAL 183 + + +G + + + ++ I+ ++A + TR+G+ RA+A D A Sbjct: 130 PFPSLLPTGSVDIGTLALRADNVILLISGLAIIAGVHFLITRTRLGMAIRAVAQDGETAR 189 Query: 184 AVGLRLPRILTAVWATAGLIALIAGLLWGARLG-VQFSLSLVV-LKALPVLVLGGFDSIL 241 +G+ ++ +A +A +AG++ G + F++ L++ + +LGG +I Sbjct: 190 LMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFSAAILGGLGNIY 249 Query: 242 GAIVGGLLIGALEKLAEVYLG---PLVGSGIEGWFAYVAALAFLLVKPSGLFGQAALQR 297 GAI+GG L AL+ L L P + S + FA+ + + KP+GL + + +R Sbjct: 250 GAILGGFLFAALQVLGSALLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAEKSSER 308 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 6/276 (2%) Query: 17 LLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVE-HGIPFALALLLTLAA 75 L+ G Y+L+ IG LI+ V+NFA G A +V G+ F +L++ Sbjct: 12 LVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFGSLIVAAIV 71 Query: 76 MILLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLWGTQVHALDLGIDDTPLH 135 L G +IE +LR ++ + + +G+ +++ L+WG ++ P+ Sbjct: 72 GFLFGTAIEYFLLRRRDLKAIDEVMLIMIGVMIIMQNAELLMWGGVAKSVPSPFSQEPIV 131 Query: 136 VGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSYAALAVGLRLPRILTA 195 G + +S LF +TA ++ + +R+GL RA D AA VG+ + + T Sbjct: 132 WGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAKIVGVNVSHVYTL 191 Query: 196 VWATAGLIALIAGLLWGARLGVQFSL-SLVVLKALPVLVLGGFDSILGAIVGGLLIGALE 254 +A +A +AG L V ++ L LKA +++LGG ++ GA +GG ++ +E Sbjct: 192 TFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPGAALGGFILAIVE 251 Query: 255 KLAEVYLGPLVGSGIEGWFAYVAALAFLLVKPSGLF 290 + Y + + ++ LA ++ +P GLF Sbjct: 252 EFGAGY----ISTAYRDALGFLVILAVMIFRPQGLF 283 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 25/299 (8%) Query: 9 FAEVLTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAAL--TFVS--LVEHGIP 64 F +L G+ + LVA G LI+ ++N A G+ A FV+ + G+P Sbjct: 4 FFNILLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLP 63 Query: 65 FALALLLTLAAMI---LLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLWGTQ 121 L + L A I L+G+ +ER++ R + N+ + T + + + V + WG Sbjct: 64 VHLFPFVLLGAGIVIGLIGIPLERLI-RTIYNRPESFQLLLTFAVMLMFQDVLRFFWGAD 122 Query: 122 VHALDLGIDDTPLHVGQM-----MISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALA 176 L + + G M + ++++ A + ++ F T+ G RA A Sbjct: 123 PQQL----PNVSMTFGTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATA 178 Query: 177 DDSYAALAVGLRLPRILTAVWATAGLIALIAG--LLWGARLGVQFSLSLVVLKALPVLVL 234 ++ + A+G+ + R+ V+ ++ I G ++ A ++ + LVV +A V+V+ Sbjct: 179 ENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVV-EAFAVVVI 237 Query: 235 GGFDSILGAIVGGLLIGALEKLAEVYLGPLVGSGIEGWFAYVAALAFLLVKPSGLFGQA 293 GG S+ GA VG L++G + L+ +Y E Y LA L+ KP+GL+G+A Sbjct: 238 GGLGSMKGAAVGALIVGLIRALSAMYY-----PEAEILAIYAIVLAVLIWKPAGLYGKA 291 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 21/211 (9%) Query: 13 LTGGLLSGVMYSLVAIGFVLIYKTSGVLNFAQGAQLLFAALTFVSLVEHGIPFALALLLT 72 L GL G++ +++ G LI+ GVLNFA + + A F + + I F AL+L Sbjct: 8 LLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAY-FAYSISNAIGFWPALVLA 66 Query: 73 LAAMILLGLSIERVVLRPLVNQSPMTLFMATLGLSYVIEGVAQLLWGT-----------Q 121 A+ LLG +ER LR + + + T GLSYVI + QL+WG Q Sbjct: 67 PLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPYSIPPELQ 126 Query: 122 VHALDLGIDDTPLHVGQMMISSFDLFAAITAALMVALLSAFFRYTRMGLEFRALADDSYA 181 L P++ G MM+ + + AAI L TR+GL +A Sbjct: 127 GSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTL---------TRTRIGLVIQAALTHPQM 177 Query: 182 ALAVGLRLPRILTAVWATAGLIALIAGLLWG 212 A+G +PR+ V+A +A +AG++ G Sbjct: 178 VEALGHNVPRVFMWVFAGGCALAGLAGVIGG 208 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.144 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 452,708 Number of extensions: 13355 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 6 Length of query: 298 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 215 Effective length of database: 914,170 Effective search space: 196546550 Effective search space used: 196546550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)