BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0748.p (291 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 202 1e-53 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 172 2e-44 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 135 4e-33 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 132 2e-32 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 129 2e-31 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 202 bits (515), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/253 (43%), Positives = 159/253 (62%), Gaps = 3/253 (1%) Query: 34 VLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQL 93 +L ++ VS FGG+QALS +++ I +I +IGPNGAGK++ NV++GLY+ G +L Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 94 AGR-YWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGLGRA 152 AG+ Y P P ++ + G+ARTFQN+ LF ++ +N+++GR + A Sbjct: 66 AGKPYSPSAPH-KVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 153 RRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMAG 212 RRE R A +++ F+ + AER L YG Q+R+E+ARAL P+LL LDEP AG Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 213 MTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPAAVRQ 272 M TEK + + + + G ILLIEHD+ L+ L DR+ VL+YG+ IA+G PA V++ Sbjct: 185 MNATEKLGLRELLVKIKAE-GKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQK 243 Query: 273 DAAVIEAYLGVAH 285 D AVIEAYLG +H Sbjct: 244 DPAVIEAYLGGSH 256 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 152/265 (57%), Gaps = 3/265 (1%) Query: 26 LARQASAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYR 85 +++ + L+L V++ G+ A+ + + A +I+++IGPNGAGK++ NV+SG + Sbjct: 1 MSQTNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMK 60 Query: 86 PTQGQVQLAGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQ 145 PT G+V+L G + ++ +LG+ R+FQ ++F +V +NI+ + L+ Sbjct: 61 PTSGRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQA 120 Query: 146 IAGLGRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLL 205 + + RRE R A+ ++AFL L A A L YG Q+ + + AL A+P++LL Sbjct: 121 LLRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLL 180 Query: 206 LDEPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADG 265 LDEP AG+ +E VR Q G +LL+EHD+ +V +SD + VLNYGR IA G Sbjct: 181 LDEPAAGLNPSETEAFKEMVRRI-GQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATG 239 Query: 266 TPAAVRQDAAVIEAYL--GVAHREQ 288 +P+ ++ D VI AYL G+ H E Sbjct: 240 SPSEIQNDPEVIRAYLGSGIEHAEN 264 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 135 bits (339), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 9/254 (3%) Query: 37 LSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQLAGR 96 ++D+++ FGG+ AL +++ I+ E+L ++GPNG+GK++ NV++GLY+ T G + G+ Sbjct: 23 VTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIYKGQ 82 Query: 97 YWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGLGRARRER 156 + R GVARTFQ L L+V DNIV+G M L + + R Sbjct: 83 EVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLF---FNLFQRKAFR 139 Query: 157 QHARALADQMIAFLD-----LGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMA 211 A ++ A L+ L A VG ++R+E+ RAL++QPRLLLLDEP A Sbjct: 140 AEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPSA 199 Query: 212 GMTVTEKSEMAGFVRAARDQF-GTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPAAV 270 GMT E + + R + I+LIEH++ ++ ++DR V NYG+KIA+GT A + Sbjct: 200 GMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAEI 259 Query: 271 RQDAAVIEAYLGVA 284 D V AYLG A Sbjct: 260 TADPNVQTAYLGEA 273 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 34 VLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQL 93 +L + +S +G AL ++DL++ E ++V+GPNGAGK++LVNV++GL++PT G V Sbjct: 7 LLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGHVNF 66 Query: 94 AGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQ-IAGLGRA 152 G V L G+AR FQ ++F L+VR+ I + S+L Q G G Sbjct: 67 DGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVS-----ACSYLNQRWNGFGHL 121 Query: 153 RRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMAG 212 R+ + AF L + G LP+G +K +++A A P+++LLDEP AG Sbjct: 122 FGSRKINDIVVRTADAF-GLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPTAG 180 Query: 213 MTVTEKSE-MAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIAD 264 ++ +K M +RAA+ AI+L+EHD+ LV S R+ + G+KIAD Sbjct: 181 VSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIAD 233 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 138/255 (54%), Gaps = 15/255 (5%) Query: 35 LQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQLA 94 L+L +V FG + + L + + LA+IGPNGAGKS+L N++SG + + G + L Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 95 GRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAM--RASFLEQIAGLGRA 152 G ++ R G++R+FQ +F LSV +N+ + ++ R SF +++ GL Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGL--- 122 Query: 153 RRERQHARALADQMIAFLDLGAHAERAVGG--LPYGLQKRVELARALVAQPRLLLLDEPM 210 Q A+Q++ ++G H R V L Y Q+ +E+ + ++LLLDEP Sbjct: 123 ----QDVNQRAEQVME--EIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPT 176 Query: 211 AGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPAAV 270 AGM+ +E +R + G +L++EHD+ +VF L+DR+AVL YG IA TP + Sbjct: 177 AGMSRSESDAAVELIR--KISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNI 234 Query: 271 RQDAAVIEAYLGVAH 285 R + V +AYLG Sbjct: 235 RNNPLVQQAYLGTVE 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 625,292 Number of extensions: 26548 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 64 Length of query: 291 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 209 Effective length of database: 917,867 Effective search space: 191834203 Effective search space used: 191834203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)