BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0741.p
         (418 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [...   104   8e-24
gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [...    96   4e-21

>gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610
           [Janthinobacterium sp. Marseille]
          Length = 194

 Score =  104 bits (260), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 155 LARTLGLDDTACQQAGLAGFLHDVGKAFIPLEVLNKPGLLTEQEYKIVQRHPVLGHAYLS 214
             R +GL +T     G+   +HD+GK  I   VLNKP  LT  E+  +++HP+ G+  L+
Sbjct: 42  FGRYIGLSETESSLLGIGAGIHDIGKLCINEHVLNKPSRLTSAEFFFIKQHPMAGYQLLA 101

Query: 215 GLVGVPDEVLDVCLHHHQKMDGSGYPARQQDQKISLFSRMAAVCDVYDAVTSHRVYKEAW 274
            L  +   V D  LHHH+  DGSGYP     + I LF+R+  + D YDA+T +R Y +  
Sbjct: 102 PLE-LDTRVTDCVLHHHENFDGSGYPHGLAGENIPLFARIVRIWDSYDAITMNRPYHKGR 160

Query: 275 DPAESLSRMASWQGHFDRTIFLAFVKML 302
            P+E+L+ +   +  +D  +  +F  M+
Sbjct: 161 SPSEALALLEKDKALYDPALLASFSSMM 188


>gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 6/167 (3%)

Query: 138 DEYTYLHSIAVCTMMVALARTLGLDDTACQQAGLAGFLHDVGKAFIPLEVLNKPGLLTEQ 197
           D YT  H   V      LA  LG+ +T   +  + GFLHD+GK  IP ++LNK   L+E+
Sbjct: 37  DPYTGGHLWRVSRFAHRLALELGMSETDAARIAIGGFLHDLGKVGIPDQILNKKDKLSEE 96

Query: 198 EYKIVQRHPVLGHAYLSG--LVGVPDEVLDVCLHHHQKMDGSGYPARQQDQKISLFSRMA 255
           EY +++ HP +G   L+   L  + +  +     HH+  DG GYP   +   I + +R+ 
Sbjct: 97  EYDVIRTHPEIGWRMLANHPLAHIAEHAIRF---HHETPDGKGYPTGIRGTDIPVEARIV 153

Query: 256 AVCDVYDAVTSHRVYKEAWDPAESLSRMASWQG-HFDRTIFLAFVKM 301
            +CD +DA+TS R Y++     ++LS + S  G  FD  I   FV +
Sbjct: 154 GICDAFDAMTSTRPYRKGMPIEKALSIIESELGRQFDSIIGAKFVAL 200


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 954,670
Number of extensions: 37354
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 332
Effective length of database: 903,079
Effective search space: 299822228
Effective search space used: 299822228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)