BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0740.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983030|ref|YP_001352585.1| LysR family transcriptional reg... 142 2e-35 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 134 6e-33 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 134 7e-33 gi|152981603|ref|YP_001353709.1| LysR family transcriptional reg... 132 2e-32 gi|152981622|ref|YP_001353551.1| LysR family transcriptional reg... 125 2e-30 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 148/272 (54%), Gaps = 16/272 (5%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 MD L M +F RVVE G+FS A E T S+VS+ ++ALE LG LL RTTR L LTE Sbjct: 1 MDKLQAMKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTE 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 G+ ++ R++A +EA + ++L G LRIAAS L+P ++ F+ H Sbjct: 61 EGERYFEQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRG 120 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYLQRQP---- 179 +KI++ ++D +DL+++ +D+A+R+G LP + IA + +L A +YL+ P Sbjct: 121 VKIDLRLHDGFIDLVEQGIDVAVRLGDLPDSSLIARRVGTASRMLMAHRSYLRSLPKGTK 180 Query: 180 -PIRRPEDLLMHHFLFFTPVGVDLTLRNRVGHCAQ--------LRLTPSIAVNHARSLRK 230 PI P+DL H+ + +T + + T + G A +R+ ++ N + +R Sbjct: 181 TPI-TPDDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRA 239 Query: 231 LVLQGHGVARMLKSKVQDDLDAGRLQVVLPDW 262 +L G G+ + +L +G +Q +LPDW Sbjct: 240 SILGGMGITYSPTWLFEKELASGEVQRILPDW 271 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 134 bits (337), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 148/299 (49%), Gaps = 6/299 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 MD L ++ F VE +F+ AA L +T V + I LE LG LLHR+TR+L LTE Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 G + HC +++ A + H ++ G L ++A + +++ P +EF+ HP Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKL--PGAGDIALARLEAVLCASPAYLQRQPPIRR 183 LK++ ++ D VDL+ + D+ +R+G P I LA + V+C + Y ++ + Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKT 180 Query: 184 PEDLLMHHFLFFTPVGVDL--TLRNRVGHCAQLRLTPSIAVNHARSLRKLVLQGHGVARM 241 +DL H+ L F G N G +R S+ N L + + +G G+A Sbjct: 181 LDDLANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAWR 240 Query: 242 LKSKVQDDLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCIAQIQAYFRRRHPG 300 ++Q L++G L+ VL D++ Y + VPAK+ + I+ ++A + + PG Sbjct: 241 SVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKAMYSQ--PG 297 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 134 bits (337), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 7 DYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTEA 66 D M + VV+ G+FS AAR LG+ ++VS+ I LE +L T +L R+TR+L +TEA Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 67 GQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQL 126 GQ + A C RI+ +EA + G+L I ++++P + +F++++P + Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 127 KINIDVNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYLQRQPPIRRP 184 + + + DH V L+++ VD+A+RVG+LP + +A + + V+CASPAYL++ ++P Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKKP 182 Query: 185 EDLLMHHFLFF 195 +DL H + F Sbjct: 183 DDLSKHQCITF 193 >gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 7/295 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 MD M IF R++E +F+KAA +L L ++V+ ++ LE LG+ LL+RTTR + T Sbjct: 1 MDRFQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTL 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 G +Y C R++ EA + + G LR+ +A+ +LVP L F +P Sbjct: 61 DGDAYYTRCVRLLTDIEEADGAFRNTAPK--GLLRVGVQGTVAAHFLVPTLPAFFARYPG 118 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKLPGAGDIA--LARLEAVLCASPAYLQRQPPIRR 183 +++++D +D VDL+ + +D LR G + IA +A LE V CASPAYL R R Sbjct: 119 MELHMDESDRLVDLVREGIDCVLRGGTPQDSSLIARRIAMLEQVSCASPAYLARYGQPRN 178 Query: 184 PEDLLMHHFLFF--TPVGVDLTLRNRV-GHCAQLRLTPSIAVNHARSLRKLVLQGHGVAR 240 EDL H + + + G L V G + L +I+V + L G G+ + Sbjct: 179 IEDLTKHKAVNYISSASGKPFPLEFMVNGRMQSIVLPTAISVTGTKVYTGCALAGLGIVQ 238 Query: 241 MLKSKVQDDLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCIAQIQAYFR 295 M + ++ +L GRLQ +LPD P + + A+I V +Q F+ Sbjct: 239 MPRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIRVFSEWLQDIFK 293 >gi|152981622|ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 307 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 6/296 (2%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLCLTE 65 M+ + + F R E G+FS+AAR LGLTS++V ++++ LEA L L R+TR+L LTE Sbjct: 1 METMSSIECFVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTE 60 Query: 66 AGQGFYAHCARIVALANEARENTESLHKELVGELRIAASSFMASEYLVPALEEFIRSHPQ 125 AG+ F A + +A+ A N S + G L+I+ + Y+VP L +F+ +P Sbjct: 61 AGERFLAEVSGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIVPLLGDFLTRYPA 120 Query: 126 LKINIDVNDHNVDLMDKSVDLALRVGKL--PGAGDIALARLEAVLCASPAYLQRQPPIRR 183 + + ++ VD++ + D A+ G PG L +L A+P Y P+ Sbjct: 121 ITPDWHFDNRRVDMIAEGFDAAIGGGFELPPGVVARTLGPSHGILVAAPDYFDTHTPLAS 180 Query: 184 PEDLLMHHFLFFTPVGVD----LTLRNRVGHCAQLRLTPSIAVNHARSLRKLVLQGHGVA 239 P +L H +F +LRN+ A + + + ++ + + G G+A Sbjct: 181 PSELGQHDGIFIRSPQTGRIRPWSLRNKGNEQAPVAMRVRMTMSDPDAACEAAQSGLGIA 240 Query: 240 RMLKSKVQDDLDAGRLQVVLPDWSPDSYCAFITTKYRDAVPAKILVCIAQIQAYFR 295 + L++GRL+ VLPDW D + + +PAK V + + +FR Sbjct: 241 LVSVPNALRYLESGRLKRVLPDWYVDIGTLSLYFPAQKLLPAKTRVFVDYVVEHFR 296 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 681,466 Number of extensions: 26629 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 33 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)