BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0734.p (437 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 206 2e-54 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 201 9e-53 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 193 2e-50 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 156 2e-39 gi|152980882|ref|YP_001354331.1| major facilitator transporter [... 148 7e-37 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/406 (32%), Positives = 219/406 (53%), Gaps = 2/406 (0%) Query: 13 AAIVGNALEWYDFIVYGFFSAII-ARLFFPADNEYTSLLVALATFGIGFFMRPVGGVLLG 71 A+ +G +EWYDF++YG +A++ +LFFP + L AL T+ +GFF RP+GG + G Sbjct: 27 ASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFFARPLGGAIFG 86 Query: 72 LYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARMLQGFATGGEYSS 131 + DR GRK+ + + + +M + +I PTY IGI AP++++V R +QG GGE+ Sbjct: 87 HFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQGVGLGGEWGG 146 Query: 132 STAFLVESAPANQRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSPQALDNWGWRLPFVIG 191 + ++E AP ++RG YGS VG L + G+ A+V++ L +WGWR+PF++ Sbjct: 147 AALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGVFAIVSK-LPEADFLSWGWRIPFLLS 205 Query: 192 LLIGPVGLWIRRHMHETDDFMESANKPDAAPIKLLDVVKTNLRGVLVSMGQVINGTVAFY 251 +++ VG IR + E+ F++ K + + +LD + N R L ++G I+ Y Sbjct: 206 IVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGLKISEVSWVY 265 Query: 252 VVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTLIIPFAGALSDRIGRRTVLLYSSLAFL 311 ++ V + A L LP + A + + IP G LSD++GRR + ++ +L + Sbjct: 266 ILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRRPMYIWGALFTV 325 Query: 312 LTVYPLFVWVATAPSLPRLLVMQVLLCIMIGANYGPMPTALSEQFPTRVRSTGLAVAYNL 371 +PLF+ + T S + VM V L + G + P T E F VR +G + + + Sbjct: 326 ALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANVRYSGATLGFQV 385 Query: 372 AAMLFGGFAPFIVTWLTKTSGSPVAPAWYVLLAACIGVAAAWAMRD 417 AA + GG +P I T L G + ++L A I + AA + R+ Sbjct: 386 AAAIGGGLSPIIATGLMAYFGGTTGVSVMLILLAAITLVAAISARE 431 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 201 bits (510), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/392 (32%), Positives = 214/392 (54%), Gaps = 7/392 (1%) Query: 1 VQPQLSKQR---QVIAAIVGNALEWYDFIVYGFFSAII-ARLFFPADNEYTSLLVALATF 56 V P+ KQ+ V A+ +G +EWYDF++YG +A++ +LFFP + L AL ++ Sbjct: 12 VNPRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSY 71 Query: 57 GIGFFMRPVGGVLLGLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVV 116 +GF RP+GG + G Y DR GRK+ + + + LM + +I PTY IGI API+++ Sbjct: 72 AVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLIT 131 Query: 117 ARMLQGFATGGEYSSSTAFLVESAPANQRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSP 176 R++QG GGE+ + ++E +P N+RG YGS VG L + + + V++ P Sbjct: 132 LRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFVSK--MP 189 Query: 177 QA-LDNWGWRLPFVIGLLIGPVGLWIRRHMHETDDFMESANKPDAAPIKLLDVVKTNLRG 235 +A + +WGWR+PF++ ++ VG++IR+++ E+ F + + + ++DV+ + R Sbjct: 190 EADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPRT 249 Query: 236 VLVSMGQVINGTVAFYVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTLIIPFAGALSD 295 +++G I+ Y++ V M +A LGLP +IA + + IP G LSD Sbjct: 250 FFIAIGLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSD 309 Query: 296 RIGRRTVLLYSSLAFLLTVYPLFVWVATAPSLPRLLVMQVLLCIMIGANYGPMPTALSEQ 355 IGRR + +L + +PLF+++ +L + V + + G + P T E Sbjct: 310 VIGRRPLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPEL 369 Query: 356 FPTRVRSTGLAVAYNLAAMLFGGFAPFIVTWL 387 F VR +G + + +AA + GG +P I T L Sbjct: 370 FGANVRYSGASFGFQVAAAIGGGLSPIIATAL 401 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/397 (31%), Positives = 212/397 (53%), Gaps = 12/397 (3%) Query: 2 QPQLSKQRQVIAAIVGNALEWYDFIVYGFFSAII-ARLFFPADNEYTSLLVALATFGIGF 60 + + S + A+++G +E++DF +Y + ++ LFFP+ N +L +LATF I F Sbjct: 9 EKKNSPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAF 68 Query: 61 FMRPVGGVLLGLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARML 120 F RPVG + G Y DR GRKA + ++ M ++ +I PTY IG AP+++ + R Sbjct: 69 FARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFG 128 Query: 121 QGFATGGEYSSSTAFLVESAPANQRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSPQALD 180 QG GGE+ + E+AP + YG + +G L F G+ L++ L+ + Sbjct: 129 QGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFF 188 Query: 181 NWGWRLPFVIGLLIGPVGLWIRRHMHETDDFMESANKPDAAPIKLLDVVKTNLRGVLVSM 240 ++GWR+PF+ ++ VGL++R + ET F + +K + + + + + + R VLV + Sbjct: 189 SYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHSR-VLV-L 246 Query: 241 GQVINGT--VAFYVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTLIIPFAGALSDRIG 298 G +I V FY++ V ++ LG + ++Q+ AV L IP + L+D+ G Sbjct: 247 GTIIATATFVLFYLMTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLADKYG 306 Query: 299 RRTVLLYSSLAFLL---TVYPLFVWVATAPSLPRLLVMQVLLCIMIGANYGPMPTALSEQ 355 RR ++ S+A +L + P+FV ++ + + L +M G YGP+ T LSE Sbjct: 307 RRITMILVSIAIMLFGFLISPMFV---AHDAIGVTFFLSLGLALM-GMTYGPLGTMLSEL 362 Query: 356 FPTRVRSTGLAVAYNLAAMLFGGFAPFIVTWLTKTSG 392 FPT +R TG+++ +NL ++ AP+ TWL G Sbjct: 363 FPTEIRYTGVSLTFNLGGIVGASLAPYAATWLATNYG 399 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 28/328 (8%) Query: 7 KQRQVI-AAIVGNALEWYDFIVYGFFSAIIARLFFPADNEYTSLLVALATFGIGFFMRPV 65 ++R+VI A+ +G EWYDF +YG +AIIA+ FF + T+ + AL F GF +RP Sbjct: 14 EERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLAFAAGFIVRPF 73 Query: 66 GGVLLGLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARMLQGFAT 125 G ++ G D GRK V IV+M + I+ P YA+IGIAAPI++++ R+LQG A Sbjct: 74 GAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIILRILQGLAL 133 Query: 126 GGEYSSSTAFLVESAPANQRGLYGSWQLVGQCLAVFCGAGMGALV---TRN-LSPQALDN 181 GGEY + ++ E AP +RG + SW + +F M LV TR + +A + Sbjct: 134 GGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLF----MSLLVILGTRTAMGEEAFAD 189 Query: 182 WGWRLPFVIGLLIGPVGLWIRRHMHETDDF--MESANKPDAAPIKLLDVVKTNLRGVLVS 239 WGWR+PF++ + + + +WIR M+E+ F M+S K AP+ NL+ V+++ Sbjct: 190 WGWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWGNLKIVILA 249 Query: 240 M-----GQ-VINGTVAFYVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTLIIPF---A 290 + GQ V+ T FY + T L +D +IA +LL L PF Sbjct: 250 LIGLTAGQAVVWYTGQFYALFFLTQT-------LKVDGPTANILIAASLL-LATPFFVIF 301 Query: 291 GALSDRIGRRTVLLYSSLAFLLTVYPLF 318 G+LSD+IGR+ +++ L LT +P+F Sbjct: 302 GSLSDKIGRKPIIMAGCLIAALTYFPIF 329 >gi|152980882|ref|YP_001354331.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 447 Score = 148 bits (373), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 110/419 (26%), Positives = 195/419 (46%), Gaps = 13/419 (3%) Query: 12 IAAIVGNALEWYDFIVYGFFSAII-ARLFFPADNEYTSLLVALATFGIGFFMRPVGGVLL 70 I ++G A E++DF VY S ++ +FFP L + F F RP+G V Sbjct: 39 IGVVIGRASEYFDFFVYAIASVLVFPSVFFPFAQPLEGTLYSFTVFAFAFLARPLGTVAF 98 Query: 71 GLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARMLQGFATGGEYS 130 R R+A + + + L+ + A IAF P+YA +G++A + + + R+ QG A GG + Sbjct: 99 MAIQRRFSREAKLTLALFLLGFSTAGIAFLPSYAQLGMSAILFLSLLRIGQGIALGGSWD 158 Query: 131 SSTAFLVESAPANQRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSPQALDNWGWRLPFVI 190 + L +AP N+RG Y +G + AG+ + + LS WGWR PF + Sbjct: 159 GLPSLLALNAPQNRRGWYAMLGQLGAPVGFLIAAGLFSFLLSELSRADFLEWGWRYPFYV 218 Query: 191 GLLIGPVGLWIRRHMHETDDFMESANKPDAAPIKLLDVVKTNLRGVLVSMGQVINGTVAF 250 I V L+ R + T ++ ++ + P+ ++V+ R +++ + F Sbjct: 219 AFAINVVALFARLRLVSTPEYSRLLDEQELEPVSATEIVQKQGRNLIIGALAALASYALF 278 Query: 251 YVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTLIIPFAGALSDRIGRRTVLLYSSLAF 310 ++V V ++ + + VQM+ AL + + +G ++DR GRRT L +LA Sbjct: 279 HLVTVFPLSWISLYSDRSISAFLHVQMMGAALAAVGVVISGLIADRFGRRTTL--GTLAC 336 Query: 311 LLTVYPLFVWVATAPSLPRLLVMQVLLCIMIGANYGPMPTALSEQFPTRVRSTGLAVAYN 370 L+ ++ FV + + ++ ++G +YG A+S F + R TG A+ + Sbjct: 337 LIAIFSGFVPMLLNGGTRGEDLFILIGFALLGLSYGQAAGAVSANFHAKYRYTGAALTSD 396 Query: 371 LAAMLFGGFAPFIVTWLTKTSGSPVAPAWYVLLAACIGVAAAWAMRDQSPAAKNRQTEV 429 LA ++ FAP + L+ G + LL+ +G AA ++ NR E+ Sbjct: 397 LAWLVGAAFAPLVALGLSAHFGLGYVSLY--LLSGAVGSLAALSL--------NRALEI 445 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,061,631 Number of extensions: 46815 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 7 Length of query: 437 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 351 Effective length of database: 903,079 Effective search space: 316980729 Effective search space used: 316980729 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)