BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0733.p (482 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 131 1e-31 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 112 5e-26 gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 92 6e-20 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 84 3e-17 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 140/489 (28%), Positives = 215/489 (43%), Gaps = 41/489 (8%) Query: 12 LSDAIRRKKVSCREVMQAYLQHIEKVNPHVNAIVSLRPTEALLDEAERADQLLAQGRYLG 71 LS + K++S E+ Q +L I + + +NA + + P L EA ADQ LA G Sbjct: 9 LSALLHSKQISATELAQLFLDRIAQSD--LNAFLHVDPA-LTLKEAALADQRLASGD-TT 64 Query: 72 WMHGMPQAPKDLASCKGLPTSKGSPLSAMEPDLSDTTCIARVREAGAIFIGKTNVSEFGL 131 + G+P A KD+ + ++ GS + D T + + ++AG + +GK N EF + Sbjct: 65 VLTGIPIAHKDIFVTRDWRSTAGSKMLENYVSPFDATVVEQFKQAGMVHLGKLNCDEFAM 124 Query: 132 GSNSYNPVFGVTRNAYDFSRIAGGSSGGAAAALAMRMLPVADGSDMMGSLRNPAAFNNVY 191 GS++ N FG +N +D + I GGSSGG+AAA+A R+ P + +D GS+R PAA V Sbjct: 125 GSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCGVT 184 Query: 192 GFRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVARLFATQAGYDRRCPLSNDTDVTGE 251 G +PT G V G F L GP+ +T D L G+D R S + D Sbjct: 185 GIKPTYGSVSR-FGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIERDKEDF 243 Query: 252 VAQLKRDFKGTRIGWLGNYDGYLPIEKEVMVLCEAALSDFTDIGCT-VEQCQPDYPMEKL 310 L + +G +IG Y G + +V AAL ++ +G T V+ P E Sbjct: 244 TRDLNQPLQGLKIGLPREYFG-AGLAADVEQAVRAALKEYEKLGATLVDISLP--KTELS 300 Query: 311 WETWLIHRHWLVGANLNAY------FANPAQRGLLKPEAQWEVES-GLNLKGIDIFRASV 363 T+ + +NL+ + + L + E G +K + A V Sbjct: 301 IPTYYVIAPAEASSNLSRFDGVRYGYRAKDYTDLSDMYRKTRAEGFGEEVKRRILVGAYV 360 Query: 364 ARSDWYRAIH---------------QLFEQYDYLLLPSAQMFAFDAATTWPRNIAGREMD 408 +Y A + Q F Q D ++ P A+D IA D Sbjct: 361 LSHGYYDAYYLQAQKIRRLIAQDFQQAFTQCDVIMGPVCPTVAWDLGDKADDPIANYLAD 420 Query: 409 TYHRWMEVVIGPTLAGLPAMSVPVGFG----TNGLPMGMQIIGPSRDDIGVLQLAHALEA 464 + + +LAGLP MS+P GFG + P+G+QIIG + +L +AH + Sbjct: 421 IF------TLSTSLAGLPGMSIPCGFGQGEKNSKRPVGLQIIGNYFAEAKLLNVAHQYQQ 474 Query: 465 LRPWVSQAP 473 W + P Sbjct: 475 ATDWHLRQP 483 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 134/459 (29%), Positives = 206/459 (44%), Gaps = 51/459 (11%) Query: 12 LSDAIRRKKVSCREVMQAYLQHIEKVNPHVNAIVSLRPTEALLDEAERADQLLAQGRYLG 71 L+ I R++V+ +V +A + HIE+ P V+A P + + E+A +L AQ + G Sbjct: 12 LAACIARREVTVEDVARAGITHIEEYEPAVHAWQHFDPQQVI----EQARRLDAQ-PHQG 66 Query: 72 WMHGMPQAPKDLASCKGLPTSKGSPLSAMEPDLSDTTCIARVREAGAIFIGKTNVSEFGL 131 ++G+P KDL +PT+ GSP+ L D C+A R AGA+ +GKT +EF Sbjct: 67 LLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLVDAACVAASRSAGAVLMGKTVTTEFA- 125 Query: 132 GSNSYNPVFGVTRNAYDFS-RIAGGSSGGAAAALAMRMLPVADGSDMMGSLRNPAAFNNV 190 ++ P G TRN + + GGSS G+AAA+A M+P A + GS+ PAA+ V Sbjct: 126 ---TFQP--GPTRNPHGATDHTPGGSSSGSAAAVASGMVPAAFATQTAGSIVRPAAYCGV 180 Query: 191 YGFRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVARLFATQAGYDRRCPLSNDTDVTG 250 G++PT G +P +G + L T G + R VAD A A R PLS + + Sbjct: 181 VGYKPTFGTLPL-AGIKSLSPSLDTVGVLTRNVADAAFFIGALA----RLPLS--SQLAP 233 Query: 251 EVAQLKRDFKGTRIGW----LGNYDGYLPIEKEVMVLCEAALSDFTDIGCTVEQCQPDYP 306 E A R W + D IE+ V +L + G + P Sbjct: 234 EAAPRLRVGICRTPNWERASVATRDA---IEQAVRLLERS--------GAVLRDIDLPAP 282 Query: 307 MEKLWETWLIHRHWLVGANLNAYFANPAQRGLLKPEAQWEVESGLNLKGIDIFRASVARS 366 L + + + A + A+ G K A +E+G + G A + Sbjct: 283 CGGLTDAQIRIMSYEASAAFEPEARSHAE-GFSKAFAAV-LEAGRGIDGTSYVAAQALAA 340 Query: 367 DWYRAIHQLFEQYDYLLLPSAQMFAFDAATTWPRNIAGREMDTYHR-WMEVVIGPTLAGL 425 + + +FE D LL PS + A P + ++R W +L G Sbjct: 341 ASRQMVAGVFETVDILLAPSTEGEA-------PAGLDATGDPIFNRMW-------SLLGN 386 Query: 426 PAMSVPVGFGTNGLPMGMQIIGPSRDDIGVLQLAHALEA 464 P + VP+G G G+P+G+ +IGP D L A+ LE+ Sbjct: 387 PCVHVPLGAGPGGMPIGVTLIGPRWGDASTLAAANLLES 425 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 106/403 (26%), Positives = 168/403 (41%), Gaps = 51/403 (12%) Query: 73 MHGMPQAPKDLASCKGLPTSKGSP--LSAMEPDLSDTTCIARVREAGAIFIGKTNVSEFG 130 + G+ A KD+ G T G+P LS + R+ GA F+GKT E Sbjct: 42 LEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELT 101 Query: 131 LGSNSYNPVFGVTRNAYDFSRIAGGSSGGAAAALAMRMLPVADGSDMMGSLRNPAAFNNV 190 N +GV RN R+ GGSS G+ AA+A + +A G+D GS+R PA++ V Sbjct: 102 YSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCGV 161 Query: 191 YGFRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVARLFATQAGYDRRCPLSNDTDVTG 250 +G RPT GR+ G G T G T+ + + F C L++ + Sbjct: 162 WGMRPTHGRL-SGHGCLTLAHSFDTVGWFADTLEHLEQTF---------CALAHAETTSM 211 Query: 251 EVAQLKRDFKGTRIGWL--GNYDGYLPIEKEVMVLCEAALSDFTDIGCTVEQCQ--PDYP 306 L + G G L +D + ++ E SDF + +E + Sbjct: 212 PATFLTLNDSGIN-GLLDPAVFDAFSKLKNE--------QSDFLAVDSELELASWAAAFR 262 Query: 307 MEKLWETWLIHRHWLVGANLNAYFANPAQRGLLKPEAQWEVESGLNLKGIDIFRASVARS 366 + + E W+ H W V + + + QR + + +G+ + A R Sbjct: 263 ILQASEAWMEHGLW-VTQHADELGVDIRQR--------FNIAAGVT--ATQVRTAQEVRI 311 Query: 367 DWYRAIHQLFE-QYDYLLLPS----AQMFAFDAATTWPRNIAGREMDTYHRWMEVVIGPT 421 R ++++ + Q+ ++LP+ A + D+AT D R ++ Sbjct: 312 AAIRELNRILDSQHKVIVLPTVPTPAPLLTADSATV---------DDVRMRSQHLLCIAG 362 Query: 422 LAGLPAMSVPVGFGTNGLPMGMQIIGPSRDDIGVLQLAHALEA 464 LAGLP +S+P NG P+G+ IIG D VL AH L+A Sbjct: 363 LAGLPQLSMPW-IQVNGAPVGLSIIGGRGCDEIVLHAAHKLQA 404 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 108/405 (26%), Positives = 163/405 (40%), Gaps = 47/405 (11%) Query: 73 MHGMPQAPKDLASCKGLPTSKGSPLSAMEPDLSDTTCIARVREAGAIFIGKTNVSEFGLG 132 ++G+P A KD G+ T+ P A + T + R+ +AGAI IGKTN+ +F G Sbjct: 68 LYGVPFAAKDNIDVAGIRTTAACPEFAYIAE-QHATVVQRLLDAGAIVIGKTNLDQFATG 126 Query: 133 SNSYNPVFGVTRNAYDFSRIAGGSSGGAAAALAMRMLPVADGSDMMGSLRNPAAFNNVYG 192 +G N++D ++GGSS G+A+ +A ++P + G+D GS R PA NN+ G Sbjct: 127 LVGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPAGLNNIVG 186 Query: 193 FRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVARLFATQAGYDRRCPLS--NDTDVTG 250 +PT G + G G + L TVAD +F AG+D S V Sbjct: 187 LKPTVGSL-SGRGVVPACRTLDCVSIFATTVADAELVFTQAAGFDAADAYSRARPEHVLN 245 Query: 251 EVAQLKR-------DFKGTRIGWLGNYDGYLPIEKEVMVLCEAALSDFTDIGCTVEQCQP 303 ++ R +F G I + V S F + + Sbjct: 246 KLPAKPRFGIPAQPEFYGDTIAAAAYAQALEAVRASGAVCIPLDFSLFDQVTALLY---- 301 Query: 304 DYPMEKLWETWLIHRHWLVGANLNAYFANPAQRGLLKPEAQWEVESGLNLKGIDIFRASV 363 D P W+ R+ + A FA + P + + D F A Sbjct: 302 DGP-------WVAERYAAIEA-----FAK-EHGDAIHPVVRDIIFRAREFSATDTFNAQY 348 Query: 364 ARSDWYRAIHQLFEQYDYLLLPSAQM---FAFDAATTWPRNIAGREMDTYHRWMEVVIGP 420 +D RA ++ D LL+P+A A AA RN M Y ++ Sbjct: 349 KLADLKRAADKIMASVDALLVPTAPTHYKIADVAADPVRRN---SHMGKYTNFVN----- 400 Query: 421 TLAGLPAMSVPVGFGTNGLPMGMQIIGPSRDDIGVLQLAHALEAL 465 L A++VP ++GLP G+ +IGP+ D HAL A Sbjct: 401 -LLNWCALAVPANLRSDGLPFGLTLIGPAWSD-------HALAAF 437 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,195,491 Number of extensions: 51933 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 4 Length of query: 482 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 395 Effective length of database: 899,382 Effective search space: 355255890 Effective search space used: 355255890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)