BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0731.p
         (598 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979908|ref|YP_001352182.1| DNA primase [Janthinobacterium ...   921   0.0  

>gi|152979908|ref|YP_001352182.1| DNA primase [Janthinobacterium sp.
           Marseille]
          Length = 599

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/590 (76%), Positives = 516/590 (87%)

Query: 1   VIPQSFIQDLLNRVDIVDVVGRYVQLKKGGANYMGLCPFHNEKSPSFTVSPTKQFYHCFG 60
           +IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN+MGLCPFHNEKSPSFTVSPTKQFYHCFG
Sbjct: 1   MIPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFG 60

Query: 61  CGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVM 120
           CGAHGTAI FLIEYSGMGFVEAVKDLAQNVGM+VPE ED +P AQR E QAKSMALS+ M
Sbjct: 61  CGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMIVPEAEDRLPPAQRAEHQAKSMALSEAM 120

Query: 121 TRANDFYRHQLRAAQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPDYENEALVE 180
           T+A D+YR QLR A+ A  YL GRGLTGEIAAR+G+GY+PD WD LR VFPDYE EALVE
Sbjct: 121 TQACDYYRQQLRHAERAKNYLIGRGLTGEIAARYGMGYAPDGWDGLRSVFPDYEVEALVE 180

Query: 181 SGLVIDKSEEGGGHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSPETPLF 240
           SGLVIDK+EE G +RKRYDRFR RIMFPIRNTKGQVIGFGGRV+D GEPKYLNSPETPLF
Sbjct: 181 SGLVIDKAEEEGANRKRYDRFRDRIMFPIRNTKGQVIGFGGRVLDNGEPKYLNSPETPLF 240

Query: 241 QKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQKLVR 300
           QKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQKL+R
Sbjct: 241 QKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHVQKLLR 300

Query: 301 QTDQVIFSFDGDNAGRRAARRALEACLPHASDNKIIKFLFLPKEHDPDSYVREMGASAFE 360
           QTDQVIFSFDGD AGRRAARRALEA LPHA DNK+IKFLFLP EHDPDSY+RE+G  AFE
Sbjct: 301 QTDQVIFSFDGDKAGRRAARRALEASLPHAGDNKVIKFLFLPSEHDPDSYIRELGTEAFE 360

Query: 361 EQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQFAAKPLLQALPASGLRLQIVRSVAQAT 420
           +Q+++AMPLSQFLLKE +G+NDL TPEGRA AQF AKPLLQALP S LRLQIVRS+AQ T
Sbjct: 361 KQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQFDAKPLLQALPPSSLRLQIVRSLAQIT 420

Query: 421 QTTPAELEVLFELEKPVARVRSAPPRSKRSAPVELERQIMRLLVAHPQLSADLDAGALEA 480
           ++TPAE+E LFEL +P++RVR+APPR+KR+AP  LERQIMRLLV+HP L+A++D  AL+ 
Sbjct: 421 ESTPAEIEALFELAQPISRVRAAPPRTKRAAPQGLERQIMRLLVSHPILAAEMDQAALDI 480

Query: 481 IARFAPDRAELLTYLVGVAQSMGEQANFAALVEHLREGGPEFDSMIAEIAAESESEFDVV 540
            A FAP+RAE+L  LV +++ MG QANFA L E LR  G +F+ +IAEIAAE ES+  + 
Sbjct: 481 AAHFAPERAEMLVQLVTLSREMGPQANFAILAELLRSSGSDFEPLIAEIAAEPESDVALA 540

Query: 541 RAEMAGAIRQARIRALDDEMQMLVASNLRTEEERNRYRELMQRKEWLKRQ 590
           R E+AGAIRQ +++AL DE+  LVA+ L  E+ + R+REL  +++ L+RQ
Sbjct: 541 RLELAGAIRQTKMQALRDELDQLVAAGLVGEQAQARFRELTLQQDQLRRQ 590


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,356,812
Number of extensions: 57543
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 509
Effective length of database: 891,988
Effective search space: 454021892
Effective search space used: 454021892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)