BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0728.p
         (402 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980938|ref|YP_001352178.1| hypothetical protein mma_0488 [...   671   0.0  

>gi|152980938|ref|YP_001352178.1| hypothetical protein mma_0488
           [Janthinobacterium sp. Marseille]
          Length = 398

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/395 (78%), Positives = 354/395 (89%)

Query: 8   HFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHY 67
            FDVA+IGAGAAGMMCA+VAGQRG+ VVLIDHA KLAEKIRISGGGRCNFTN+ A PQ++
Sbjct: 4   QFDVAVIGAGAAGMMCASVAGQRGKSVVLIDHAAKLAEKIRISGGGRCNFTNIDATPQNF 63

Query: 68  LSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECDVGN 127
           LSQNPHFC+SALSRYTPQDF+ L+KR+RI +HEKHKGQLFCD+SAEDII MLKAEC +GN
Sbjct: 64  LSQNPHFCKSALSRYTPQDFLALMKRYRIAYHEKHKGQLFCDNSAEDIINMLKAECALGN 123

Query: 128 VSWRMPCSVQAVGKSGEQFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYRIARQFEL 187
           VSWRMPC+V ++ KSGEQFRI T+ G+I A SLVIATGGLSIPKIGATDFAYRIA+QF+L
Sbjct: 124 VSWRMPCTVVSIAKSGEQFRIETNTGDILANSLVIATGGLSIPKIGATDFAYRIAKQFDL 183

Query: 188 KLIEPRPGLVPLTFDGKAWQSLTELAGIALEVEVETGVKKERGYFLEDLLFTHRGLSGPA 247
           K+IEPRPGLVPLTFD  AWQ    L+GIAL VEVETG KK RGYF EDLLFTHRGLSGPA
Sbjct: 184 KMIEPRPGLVPLTFDANAWQPFVPLSGIALPVEVETGAKKTRGYFKEDLLFTHRGLSGPA 243

Query: 248 ILQISSYWKPGAPLTLNLLPQLDVAETLIEGKGSIKKNLGNILAQWLPNRLAEGWLKIHG 307
           ILQISS+W+PG PLT+NL+P+ D+AE LIEGK S KKNLGN LAQWLP+RLA+ WL ++ 
Sbjct: 244 ILQISSFWQPGTPLTINLVPETDIAEALIEGKASSKKNLGNQLAQWLPSRLADEWLAVND 303

Query: 308 FDAGARIADMPDKSLKKLGDSLNRWVIVPSGSEGYRKAEVTLGGVDTRELSQQSMMVNKV 367
           F A AR+ADM DK L+KLG SLN+W I+P+GSEGYRKAEVTLGG+DTRELSQQ+MMV+KV
Sbjct: 304 FKADARVADMQDKQLRKLGASLNQWSIIPNGSEGYRKAEVTLGGIDTRELSQQTMMVSKV 363

Query: 368 PGLHFIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402
           PGLHFIGE++DVTGWLGGYNFQWAWASGVAAG AV
Sbjct: 364 PGLHFIGESVDVTGWLGGYNFQWAWASGVAAGQAV 398


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 941,794
Number of extensions: 39704
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 317
Effective length of database: 906,776
Effective search space: 287447992
Effective search space used: 287447992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)