BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0724.p
         (919 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981969|ref|YP_001352314.1| hypothetical protein mma_0624 [...   878   0.0  

>gi|152981969|ref|YP_001352314.1| hypothetical protein mma_0624
           [Janthinobacterium sp. Marseille]
          Length = 892

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/926 (51%), Positives = 606/926 (65%), Gaps = 42/926 (4%)

Query: 1   MQLATVPIPPTPDFWQQAVRVLLREGQPLGQALQGQGEAALDFSGVQLMVPAFSHAQNFK 60
           M  +TV IPP+  FW  A R LL +   L    Q    A  D S ++++V  F+H Q  K
Sbjct: 1   MLHSTVLIPPSAAFWDDAARALL-QSDLLADTRQS---AVRDLSSLRVVVSTFAHIQLLK 56

Query: 61  AALARQLRRPYIAPRINTLSGLLAMQAP-GETAPPSESERLMQLYAQLREHGWLKKMFSA 119
           +AL RQL   +I P I +LS  + +  P   T   + SERLM LYA LR+H WLKK+FSA
Sbjct: 57  SALGRQLGGAFIPPTITSLSEYIRLLPPQAGTTAAAPSERLMSLYADLRQHAWLKKLFSA 116

Query: 120 RRNADLLPLAHTLLALSDELTLALLPEIRASASGQEAAVGRWAQALAQLLEPLAPSAHGM 179
           RRN DLLPLA  LL LSDELT A+LPE++ S    + A  RW  AL QL    +P A  +
Sbjct: 117 RRNTDLLPLAEILLTLSDELTQAMLPELKVSP---DVADARWQAALEQL----SPVARNL 169

Query: 180 LSDEAALVWQVWKTQLDANDRIVQRFDAMLALAEQASLPLVWVSPTEPEPLEAAFLAAYA 239
           LSDE  LVW +WK+QLDA+D IV RF  M+ +A QA LPL W+SP   + LE AFL AY 
Sbjct: 170 LSDETQLVWTIWKSQLDASDAIVHRFAQMMRIAAQAQLPLFWISPVAADALEQAFLDAYQ 229

Query: 240 QRQPVRIVTLDWSRPAIAPLHPIYLSAWEELARDDEGIAAADADNVRTVTTDVTLPLLCP 299
           Q++PV  +TLDW    I   +  Y +AW E+  D   +  AD            LPL  P
Sbjct: 230 QQRPVVAITLDWHAQYI---NTTYAAAWPEMLDD---VVPAD------------LPLATP 271

Query: 300 -------ADDLEIAAVQSAQIVLRWLGEGKNDIAIVAQDRVTARRLRALLERAEVAVADE 352
                  A +LE  A   AQ ++ WL +GK +IAIVAQDRV ARR+RALLERA+V VADE
Sbjct: 272 PGLSLYAAHNLEAEAKAGAQTIMDWLQQGKTNIAIVAQDRVVARRIRALLERAQVIVADE 331

Query: 353 TGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPDDHARSERVMRIETRLRRT 412
           TGWKLSTTRAAAALA+W +LV+AR ET ALLD LKSPFVF +   +++ VM  E  LRR 
Sbjct: 332 TGWKLSTTRAAAALASWLELVAARAETIALLDFLKSPFVFANTDNKADLVMASELALRRA 391

Query: 413 NIAGDWQALQSAFAEAGQADELACIIMLAKQAARFTGRKTLAQWCETQRGLCRALGMEAA 472
           N+ G W+ +  A      A  +  + +LA+QA  F+  KTL  W    +    ALGM  A
Sbjct: 392 NVLGGWELVGDALTVIPAAQNM--VKLLAQQATGFSKGKTLCDWITASQQTLDALGMRGA 449

Query: 473 LRADGAGEQCLLMLDDIAAEQGGLSDTFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPL 532
           L+ADGAG Q L +L DI  +   +   FSFAEWRA LNL+L+AT+Y+   +DRRVVMLPL
Sbjct: 450 LQADGAGAQVLQLLQDIEQDCTAVGHVFSFAEWRAFLNLQLEATAYVQLNRDRRVVMLPL 509

Query: 533 NGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLTTRAVRQRQQLRDLTELLC 592
           NGARLR FDAVL++GADA HLPS P ETLFF+N VRREL L TR  RQRQQLRD+TELL 
Sbjct: 510 NGARLRSFDAVLLVGADAEHLPSQPTETLFFANVVRRELGLATRESRQRQQLRDVTELLA 569

Query: 593 VNPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLRRVVLPPPVKQLRAQPSSMPA 652
            N +V++ WQ H++GEPNPVSPWIERLEL LA+ G   + R  +    + L   P +MPA
Sbjct: 570 ANEQVLMSWQAHKNGEPNPVSPWIERLELSLARAGLPKIARHHVGIAPRHLTPVPLTMPA 629

Query: 653 PAAPDLLPASLSASGFGSFLACPYQFFAQRMLRVAVMDELSDTPEKRDYGSWLHEILYRY 712
           P A  L P  LSASG+ S +ACPYQFFA RML ++ +DELSD PEKRDYG WLH+IL  +
Sbjct: 630 PHAAALRPHKLSASGYNSLVACPYQFFATRMLGLSGLDELSDMPEKRDYGDWLHQILAIF 689

Query: 713 HAHLRDQDTPLPARAPLLAQLSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAE 772
           H  L   +  L  RA LL ++S++VF   + +  AAL ++ARWQK MPAYL W  EREA+
Sbjct: 690 HTRL--HEVTLAGRATLLREISDQVFGLALDKSAAALGYYARWQKAMPAYLEWLAEREAQ 747

Query: 773 GWRFAFGEQAQSQALRWEDGGIELYGRLDRVDHNDRGERALLDYKTRTAANLRQKVKEED 832
           GW F  GE+   + LRW+DG I L+GR+DR+D N  GERA+LDYK+   + LR K+K+ +
Sbjct: 748 GWHFVLGEEKFEKILRWDDGEIILHGRVDRMDENATGERAVLDYKSTNQSALRDKLKQGE 807

Query: 833 DHQLAFYGLLAGGDVQHAHYVALELGPDKKTGDAAAPDFARKQKMLQQQITTTMQAVAHG 892
           DHQL FYGLL+   + +A Y+ LE   D K  +  +PD+   Q+ L  QI ++M+A+AH 
Sbjct: 808 DHQLPFYGLLSDVPLSNALYIPLEASKD-KIKEVESPDYDNWQQSLSVQIASSMRAIAHD 866

Query: 893 AALPANGIESVCQYCEMRGLCRKGAW 918
           A +PA G ESVCQYC++RGLCRKGAW
Sbjct: 867 APMPATGPESVCQYCDVRGLCRKGAW 892


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,832,111
Number of extensions: 66088
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 827
Effective length of database: 880,897
Effective search space: 728501819
Effective search space used: 728501819
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)