BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0723.p
         (108 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982671|ref|YP_001352313.1| thioredoxin [Janthinobacterium ...   198   6e-53

>gi|152982671|ref|YP_001352313.1| thioredoxin [Janthinobacterium sp.
           Marseille]
          Length = 108

 Score =  198 bits (503), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 95/108 (87%), Positives = 102/108 (94%)

Query: 1   MSEHIKHITDASFEADVLKSDKPVLVDFWAEWCGPCKAIAPILEEVAKEYDGKLQIAKLD 60
           MSE+IKHITDASF+ DVLKSDKPVLVDFWAEWCGPCK IAPILE+VAKEY GK+QI K+D
Sbjct: 1   MSENIKHITDASFDTDVLKSDKPVLVDFWAEWCGPCKMIAPILEDVAKEYAGKIQITKMD 60

Query: 61  VDSNQAIPAKFGIRGIPTLILFKNGAAAAQKVGALAKGQLVSFIDSNI 108
           VD+NQAIPAKFGIRGIPTLILFKNGA AAQKVGALAKGQL +FIDSNI
Sbjct: 61  VDANQAIPAKFGIRGIPTLILFKNGAPAAQKVGALAKGQLTAFIDSNI 108


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 204,280
Number of extensions: 6977
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 38
Effective length of database: 962,231
Effective search space: 36564778
Effective search space used: 36564778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)