BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0722.p
         (420 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980394|ref|YP_001352312.1| transcription termination facto...   830   0.0  
gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP syn...    81   1e-16

>gi|152980394|ref|YP_001352312.1| transcription termination factor
           Rho [Janthinobacterium sp. Marseille]
          Length = 421

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/420 (96%), Positives = 415/420 (98%)

Query: 1   MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60
           MHLSELKA+HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
Sbjct: 1   MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60

Query: 61  GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120
           GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
Sbjct: 61  GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120

Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180
           GE PEASKHRILFENLTPLHPNK L LERDMRGEENITGRIIDLIAP+G+GQRGLLVASP
Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASP 180

Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240
           KSGKSVMLQHIAHAITTNHP+ VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
Sbjct: 181 KSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240

Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300
           QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360
           FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360

Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420
           +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN
Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420


>gi|152980499|ref|YP_001353128.1| FliI flagellum specific ATP
           synthase [Janthinobacterium sp. Marseille]
          Length = 448

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 160 RIIDLIAPVGRGQRGLLVASPKSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEM 219
           R I+ +  VGRGQR  L A    GKSV+L  +A   T +    V++V LI ER  EV E 
Sbjct: 158 RAINSMLTVGRGQRMGLFAGSGVGKSVLLGMMARYTTAD----VIVVGLIGERGREVKEF 213

Query: 220 QRSVRGE-------VVASTFDEPATRHVQVAEMVLEKAKRLVEMKKDVVILLDSITRLAR 272
              + G        VVA+  D P    +Q A      A+   +  KDV++++DS+TR A 
Sbjct: 214 IEQILGAEGLARSVVVAAPADTPPLMRLQGAAYATAIAEHFRDEGKDVLLIMDSLTRYAM 273

Query: 273 AYNTVIPASGK-VLTGGVDANALQR-PKRFFGAARNVEEGGSLTIIATALIETGSRMDDV 330
           A   +  A G+   T G   +   + P     A    E GGS+T   T L E G    D 
Sbjct: 274 AQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGKEGGGSITAFYTVLTE-GDDQQDP 332

Query: 331 IYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREELLIKPDQLQKIWVLRKL 386
           I +  +   +  + L R LAE   YPAI++ +S +R    +  P+  ++   L++L
Sbjct: 333 IADSARAILDGHIVLNRSLAEAGHYPAIDIEQSISRAMHNITTPEHQKQTRKLKQL 388


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 956,557
Number of extensions: 40207
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 334
Effective length of database: 903,079
Effective search space: 301628386
Effective search space used: 301628386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)