BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0720.p
         (574 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981917|ref|YP_001352309.1| hypothetical protein mma_0619 [...   731   0.0  

>gi|152981917|ref|YP_001352309.1| hypothetical protein mma_0619
           [Janthinobacterium sp. Marseille]
          Length = 578

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/571 (65%), Positives = 449/571 (78%), Gaps = 2/571 (0%)

Query: 1   MKPVRLPAAATNALPRMALLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGTLADWL 60
           MKPVRLPA+AT ALPR AL AL LLYILPGL+GRDPWK +DA  FGIMWTMA G+LADWL
Sbjct: 1   MKPVRLPASATLALPRWALFALCLLYILPGLVGRDPWKPDDAAGFGIMWTMATGSLADWL 60

Query: 61  TPNVAGLPLPAESPLAYWFGAICIRLLGWLLGDPLAARVSTIGCFLVGSLSIWYTTYLLG 120
           +PN+ GL +P E PLA+WFGAICI+L GWLLG P+AAR++ I  FL+GS+++WYTTYLLG
Sbjct: 61  SPNIVGLAMPEEGPLAFWFGAICIKLFGWLLGAPMAARLAPICFFLLGSVAVWYTTYLLG 120

Query: 121 RRPEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM 180
           RR EAQPLKLAFGGQPEPKDFGRTLADGA LIYLG LGLL+HSH T+ + LQ++LVA ++
Sbjct: 121 RRAEAQPLKLAFGGQPEPKDFGRTLADGALLIYLGCLGLLVHSHGTTSEALQVSLVACSL 180

Query: 181 FGAVRVFDAGKLRHGIWLGLALGMLVLTYGWLLPAGVLIALLVLAALRKDLRALGLLLLL 240
           +   R+F+A  LR  + LGLALG L LT GW+ PA +LI + VLAA+R D   L  L+ +
Sbjct: 181 YATTRLFEAHTLRRTVVLGLALGALALTRGWVTPAALLIGIAVLAAIR-DRALLPRLVFI 239

Query: 241 ALPLSLFISAAWILALHQWAPSEAASQFDLWMSWNIYQLNRPTLSTLAFLGKYGVWFAWP 300
           ALPL+  I  AW+ A  Q  P    +  D WM+WN  Q++ P++STL +  K  +WFAWP
Sbjct: 240 ALPLAAIICGAWMWASQQVQPF-GNNPVDAWMAWNYRQVSAPSISTLQYFLKNAIWFAWP 298

Query: 301 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLVLINVHREEGMLLPLLPALAILAAFG 360
           AWPFA WA+YAWRRQ  +LHI LPL F   + +L L+N H EE  LLPLLP LAILAAFG
Sbjct: 299 AWPFAIWAVYAWRRQHAALHITLPLTFFAALLVLALLNSHGEEASLLPLLPMLAILAAFG 358

Query: 361 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPTKIARNAYKLAPGFKPGFEWI 420
           LPTMKRGAINAVDWFSVM LTT AAFIWIGWIAK+TGWP ++ARNA+K+APGFKP F   
Sbjct: 359 LPTMKRGAINAVDWFSVMMLTTCAAFIWIGWIAKQTGWPAQLARNAFKIAPGFKPEFNLF 418

Query: 421 SLAIAVAATVAWIVVVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA 480
            + IA AA+  WI +V+WR+SRRPSVLWRAVVLSSGG+ILCW+LLMTLWLPW NY KSY 
Sbjct: 419 VMLIAAAASAGWIWIVYWRVSRRPSVLWRAVVLSSGGIILCWLLLMTLWLPWGNYIKSYV 478

Query: 481 GVAEQIESKLGSVKQCVQTNVGPAQRASFAYFGNVRFADEHEQGCDYLLLQDDISNQDAS 540
           GVA+QI++ L +VK+CV +NVGPAQRASFAYFG + FA   E+ CDYLLLQD     DA+
Sbjct: 479 GVAQQIDAALPTVKRCVASNVGPAQRASFAYFGKIEFAQFGEKNCDYLLLQDAHRGNDAA 538

Query: 541 LMLRQYPGNWRMVWEGRRPSDRDERFRLYRR 571
             + +Y   W++VW GRRP+DRDERFRLYRR
Sbjct: 539 ATVTRYNQQWQLVWHGRRPADRDERFRLYRR 569


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.140    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,198,850
Number of extensions: 43557
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 486
Effective length of database: 895,685
Effective search space: 435302910
Effective search space used: 435302910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)