BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0718.p (700 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 416 e-117 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 372 e-104 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 361 e-100 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 345 5e-96 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 342 6e-95 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 381/676 (56%), Gaps = 13/676 (1%) Query: 17 ASLSAYAALEVSERIVLQDSQHRRLWLAIGAAVFGVGVWGAMLLTVAALDLTTALAFDAR 76 A L++Y AL+++ RI + LWLA GA G+G+W + + + +L L +D Sbjct: 18 AILASYTALDMAGRINSASVRGSILWLAGGAVAMGIGIWSMHFIGMLSFNLPIPLGYDLG 77 Query: 77 LVMLALLLCL-GSAFYLMHLTGIRRPLPLHLLIGGLSIGAAFNAAFHIVLKSMLLDPPLV 135 + +L+L++ + S F L ++ PL LL + +G A A + + +M + P + Sbjct: 78 ITVLSLVIAIVASGFALWRISQAELPL-FQLLGSAILMGVAIAAMHYTGMAAMRMTPGIE 136 Query: 136 YQVPLLLVALVVTEMVAVFIVTLFSASNGRKPMTGSLNSQQARRVLAAL-LVGAGLVSSA 194 Y PLL AL + ++ L+ A RK + + V+ ++G A Sbjct: 137 YD-PLLF-ALSILIAISASGAALWIAFRLRKNTPNVVRWRAMAAVVMGAAIIGMHYTGMA 194 Query: 195 VAGLRALLIDPQAHSGMSGGITREHLVNGLVFLAFLAMALALVVSGAQRNQVLKKIV--- 251 A I A G+S G +V + LA LA+AL V A+ + K+V Sbjct: 195 AANFPLGSICSAAVEGVSPGWLA--IVVIVTTLAVLAIALLTSVLDARLDSQTGKLVRSL 252 Query: 252 GRTNDKLLHFATHDVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSL 311 N +L A D LT LPNR LL DR+ + A R FA++F+DLDGFKAINDSL Sbjct: 253 ALANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSL 312 Query: 312 GHAVGDGLLVAVAQRIRACVRGEDMVARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQ 371 GH +GD LL+ VA+RIR +R +D AR+GGDEFV+++ ++ P +++ + L Q Sbjct: 313 GHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLI-EVNEPEDAASVADKLCTTLNQ 371 Query: 372 DFQVDDATLCVTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASA 431 F + L +++SIGIAVYP G T L+ +ADAAMY K +GRN Y FFE +M+ +A Sbjct: 372 PFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINA 431 Query: 432 MRHLQVRQALQQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIA 491 LQV Q L+ A+ ++FRLH+QPK++ + G EALLRW+HP G + P++FI +A Sbjct: 432 HNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLA 491 Query: 492 ERSGQILPIGDWVLHAVCTQIARWDAAGMKPVKVALNLSPLQMRTD-LVESILKVVGATG 550 E++G I+PIG+WVL C Q+ +W G + K+A+NLS +Q D LVE + + + Sbjct: 492 EKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNN 551 Query: 551 IAPQRLMFEITETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVK 610 + LM E+TE+ AM +VE + ++ +L SLG +I+IDDFGTGYSSL YL + ++K Sbjct: 552 LPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELK 611 Query: 611 IDRFFTSRLDQEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFL 670 IDR F L +IV+AI+AL +L + +VAEGVETE Q L L CD +QG+ Sbjct: 612 IDRGFIRDLAHGSDDA-SIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYF 670 Query: 671 LGRPAEAPTVPGLIDA 686 +G P + I+A Sbjct: 671 MGHPMASEQFMAAINA 686 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 372 bits (954), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/414 (44%), Positives = 267/414 (64%), Gaps = 2/414 (0%) Query: 262 ATHDVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGDGLLV 321 ATHD LTGLPNR LL DR+Q A+ + R GK A+ F+DLD FK INDSLGH VGD LL Sbjct: 275 ATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLK 334 Query: 322 AVAQRIRACVRGEDMVARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDFQVDDATLC 381 AQR+ +C+R D VAR GGDEFV+++ + + + +L + Q ++ +D Sbjct: 335 ITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKANDLEFQ 394 Query: 382 VTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHLQVRQAL 441 +T SIG+ + P+ G + L+KNAD+AMY+AK+ GRN +++F M++S L++ L Sbjct: 395 ITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLELLNRL 454 Query: 442 QQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSGQILPIG 501 +QAI + F LH+QPK AS ++ G EAL+RW G ++P+ FIP+AE +G I+P+G Sbjct: 455 RQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIPLG 514 Query: 502 DWVLHAVCTQIARWDAAGMKPVKVALNLSPLQM-RTDLVESILKVVGATGIAPQRLMFEI 560 +WVL C Q W AG P+ +++NLSP Q+ R D+VE + +++ TG+ Q L EI Sbjct: 515 EWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLELEI 574 Query: 561 TETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRFFTSRLD 620 TE+ DVE++ ++ +L+SLG I++DDFGTGYSSL+YL +F +KID+ F + Sbjct: 575 TESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDI- 633 Query: 621 QEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRP 674 D AIV AII+L L + V+AEG+ETE Q + L CD+ QG+L+ +P Sbjct: 634 ATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKP 687 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/426 (44%), Positives = 274/426 (64%), Gaps = 13/426 (3%) Query: 259 LHFATH-DVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGD 317 L F T+ D LTGL NR LL DR+ AI A R P + F+DLD FK +ND+LGH GD Sbjct: 515 LEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGD 574 Query: 318 GLLVAVAQRIRACVRGEDMVARIGGDEFVVVM-----GNLSTPVVVEQLSENILMALRQD 372 LL A+A+R++ VR D V+R+GGDEFV+++ LST +V + I+ + Q Sbjct: 575 LLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIV-----QRIMDGIAQP 629 Query: 373 FQVDDATLCVTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAM 432 ++ ++SSIG+AVYPN G T + L+K+AD AMY AK++GRN ++F+ +M+ A+ Sbjct: 630 LTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERAL 689 Query: 433 RHLQVRQALQQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAE 492 L++ L+ A+ +F LH+QP+ + ++ GVEAL+RW+HP+LG + P FI +AE Sbjct: 690 ERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAE 749 Query: 493 RSGQILPIGDWVLHAVCTQIARWDAAGMKPVKVALNLSPLQM-RTDLVESILKVVGATGI 551 +G I+PIG WV+ C Q W G+ +++++NLS Q + DL+ESI + T + Sbjct: 750 ETGLIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESIALALEETQL 809 Query: 552 APQRLMFEITETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKI 611 PQ L E+TE+ M DV+ ++REL++LG ++IDDFGTGYSSL+YL +F +KI Sbjct: 810 PPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKI 869 Query: 612 DRFFTSRLDQEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLL 671 DR F + + D AIVA+II+LAH+L++ V+AEGVETE QL LQ CDQ+QG+ Sbjct: 870 DRSFVNDI-TTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFF 928 Query: 672 GRPAEA 677 RP A Sbjct: 929 SRPITA 934 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 345 bits (885), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 180/437 (41%), Positives = 272/437 (62%), Gaps = 18/437 (4%) Query: 258 LLHFATHDVLTGLPNRVLLTDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGD 317 L A+HDVLTGLPNR LL DR+++AI + RNG V+ +DLD FK +ND++GH GD Sbjct: 472 LHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGD 531 Query: 318 GLLVAVAQRIRACVRGEDMVARIGGDEFVVVM-------GNLSTPVVVEQLSENILMALR 370 LL ++ R++A VR D VAR+GGDEFV+V+ S+ V+ + I+ A+ Sbjct: 532 VLLKIISDRLQASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVI-----QRIMEAVV 586 Query: 371 QDFQVDDATLCVTSSIGIAVYPNSGETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHAS 430 + + + ++ S+GIAVYPN G L+ +AD AMY +K+ GRN ++F+ PAM+ Sbjct: 587 KPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQ 646 Query: 431 AMRHLQVRQALQQAIAEQQFRLHFQPKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPI 490 A+ L++ L+ AI + LH+QP+ + + G+EAL+RW HP LG + P FI + Sbjct: 647 ALERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISL 706 Query: 491 AERSGQILPIGDWVLHAVCTQIARWDAAGMKPVKVALNLSPLQM-RTDLVESILKVVGAT 549 AE +G I+PIG WVL C Q W G +++A+NLS Q + L+ESI + T Sbjct: 707 AEETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQET 766 Query: 550 GIAPQRLMFEITETAAMKDVERTTQVVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQV 609 G+ + L E+TE++ M D+ER +R+L+SLG +++DDFGTG+SSLAYL +F + Sbjct: 767 GLEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTL 826 Query: 610 KIDRFFTSR--LDQEDHSGRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLLHCDQVQ 667 KIDR F ++Q+D S IV++II+LAH L++ V+AEGVET Q+ L+ C+++Q Sbjct: 827 KIDRSFVRDIAINQDDAS---IVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQ 883 Query: 668 GFLLGRPAEAPTVPGLI 684 G+ +P + + L+ Sbjct: 884 GYYFCKPLPSDQIETLL 900 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 342 bits (876), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 184/463 (39%), Positives = 300/463 (64%), Gaps = 8/463 (1%) Query: 220 LVNGLVFLAFLAMALALVVSGAQRNQVLKKIVGR---TNDKLLHFATHDVLTGLPNRVLL 276 L+ GL+ +A+ L V++ +++ + + ++G+ + L A+HD LTG+PNR+L Sbjct: 167 LMFGLLVIAYRQRRLYNVLAASEQEK--RSLIGQLEQEKGRALLQASHDYLTGIPNRMLF 224 Query: 277 TDRIQHAIEVARRNGKPFAVLFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRACVRGEDM 336 + + ARR+ K + + F+DLD FK IND+LGHAVGD LL VA+R+R +R D+ Sbjct: 225 YELAAAELARARRSRKLYGMFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRESLREYDL 284 Query: 337 VARIGGDEFVVVMGNLSTPVVVEQLSENILMALRQDF-QVDDATLCVTSSIGIAVYPNSG 395 +AR+GGDEFV+++ +++ + +++ ++ +R+ F +D + ++ SIGIA+YP G Sbjct: 285 LARLGGDEFVMLISEMTSENDIAKVAAKLVEVVREPFPDLDGHDIEISPSIGIALYPRDG 344 Query: 396 ETVDMLMKNADAAMYEAKQSGRNTYRFFEPAMHASAMRHLQVRQALQQAIAEQQFRLHFQ 455 + V+ L+ +ADAAMY AK +G TYRFF+ +++AS+ R +++ ++AI + +F LH+Q Sbjct: 345 QNVETLLTHADAAMYHAKAAGAGTYRFFDSSLNASSARDVELLTRFKRAIRDDEFCLHYQ 404 Query: 456 PKYHGASKELTGVEALLRWRHPDLGEMTPSEFIPIAERSGQILPIGDWVLHAVCTQIARW 515 P+ L G+EAL+RW+HP+ G + P++FI +AE + I+ +G WV+ A C QIA W Sbjct: 405 PRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAEENDLIVLLGRWVIDAACRQIADW 464 Query: 516 DAAGMKPVKVALNLSPLQMR-TDLVESILKVVGATGIAPQRLMFEITETAAMKDVERTTQ 574 AAG+ V VA+N+SP Q++ + L+E++++ + I P L EITE ++D + + Sbjct: 465 RAAGLPLVPVAINVSPKQLKDSALLETVMETLARYQIEPGLLEIEITEGCFIEDFDTANR 524 Query: 575 VVRELQSLGFDIAIDDFGTGYSSLAYLAQFHCRQVKIDRFFTSRLDQEDHSGRAIVAAII 634 V+ +L++ G IA+DD+GTG+S L L + +KIDR F + + D+S IVA+ I Sbjct: 525 VLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKIDRSFVRDI-RNDNSDAVIVASTI 583 Query: 635 ALAHALQMEVVAEGVETEGQLRELQLLHCDQVQGFLLGRPAEA 677 +LAH L ++VVAEGVE++ QL L+ CDQVQGF RP A Sbjct: 584 SLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFKRPVAA 626 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,269,825 Number of extensions: 46587 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 34 Length of query: 700 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 610 Effective length of database: 888,291 Effective search space: 541857510 Effective search space used: 541857510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)