BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0714.p
         (360 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981246|ref|YP_001352168.1| putative DNA-binding/iron metal...   589   e-170

>gi|152981246|ref|YP_001352168.1| putative DNA-binding/iron
           metalloprotein/AP endonuclease [Janthinobacterium sp.
           Marseille]
          Length = 352

 Score =  589 bits (1519), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/343 (82%), Positives = 314/343 (91%), Gaps = 3/343 (0%)

Query: 1   MLVLGVESSCDETGLALYDTERGLLAHALHSQIAMHQQYGGVVPELASRDHIRRAIPLLK 60
           MLVLG+ESSCDETGLALYDT+RGLLAHAL+SQ+ MH++YGGVVPELASRDHIRRA+PLL 
Sbjct: 11  MLVLGIESSCDETGLALYDTQRGLLAHALYSQVKMHEEYGGVVPELASRDHIRRALPLLD 70

Query: 61  QTLSDARVAAQEIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL 120
           Q  S++ +    IDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL
Sbjct: 71  QVFSESGIQHDAIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSPL 130

Query: 121 LASKPPRFPFIALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLLGLGYPGG 180
           LAS+PP FPFIALLVSGGHTQLMRVDGVG+Y +LGETLDDAAGEAFDKSAKLLGLGYPGG
Sbjct: 131 LASEPPEFPFIALLVSGGHTQLMRVDGVGQYTMLGETLDDAAGEAFDKSAKLLGLGYPGG 190

Query: 181 PAISRLAEFGDPNAYQLPRPMLHSKNLDFSFSGLKTAVLTVVKQHGSNGSNICEQDKANI 240
           PAISR+AEFGDP AY+LPRPMLHSKNLDFSFSGLKTAVLTVVK   +  +NICEQDKANI
Sbjct: 191 PAISRMAEFGDPTAYKLPRPMLHSKNLDFSFSGLKTAVLTVVK---NQTTNICEQDKANI 247

Query: 241 ARGFVDAIVEVLVAKCMTALKQTNLKRLVIAGGVGANAQLRAALNAAAAKRRYEVFYPEL 300
           AR FVDAIVEVL AKC+TALK T LKRLVIAGGVGAN QLRA+LNAAAAK+ ++VFYPEL
Sbjct: 248 ARAFVDAIVEVLTAKCVTALKHTGLKRLVIAGGVGANQQLRASLNAAAAKKHFKVFYPEL 307

Query: 301 QFCTDNGAMIAFAGAMRLREEPSVARKEYGFGVRPRWPLDELR 343
           +FCTDNGAMIAFAGAMRL+  P+ A+++Y F V+PRWPLD +R
Sbjct: 308 EFCTDNGAMIAFAGAMRLQLNPAAAKRDYAFNVKPRWPLDSIR 350


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 800,815
Number of extensions: 31643
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 276
Effective length of database: 910,473
Effective search space: 251290548
Effective search space used: 251290548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)