BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0713.p
         (205 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980933|ref|YP_001352167.1| putative glycerol-3-phosphate a...   297   3e-82

>gi|152980933|ref|YP_001352167.1| putative glycerol-3-phosphate
           acyltransferase PlsY [Janthinobacterium sp. Marseille]
          Length = 201

 Score =  297 bits (761), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 181/202 (89%), Gaps = 1/202 (0%)

Query: 1   MFNILFAIAAYLIGSLSFAVLVSKLFGLSDPRTYGSKNPGATNVLRSGNKKAAALTLLGD 60
           M  +LFA+ AYLIGS+SFAV+VSK F L+DPR+YGSKNPGATNVLRSGNKKAA LTLLGD
Sbjct: 1   MNTVLFALGAYLIGSISFAVVVSKCFRLADPRSYGSKNPGATNVLRSGNKKAAILTLLGD 60

Query: 61  GFKGWLAVWLAQKFGPHYGVDDTGIALVTLAVFLGHLWPVFFRFVGGKGVATALGILLAL 120
           G KG+LAVWL + FGP YGV + G+ALV +AVFLGHLWPVFFRFVGGKGVATALG+LLAL
Sbjct: 61  GAKGFLAVWLVKHFGPGYGVHENGVALVAIAVFLGHLWPVFFRFVGGKGVATALGVLLAL 120

Query: 121 NVWLGLATLATWLVVAFAFRYSSLAALVAALFAPFYYGLLFGTTDGILLAVVAMAALLIY 180
           N WLGLATL TWLV+A+AFRYSSLAAL+AA+FAPFYYGLLFG  D ILLAV+AM+ LL+Y
Sbjct: 121 NGWLGLATLVTWLVIAYAFRYSSLAALIAAIFAPFYYGLLFG-PDVILLAVLAMSILLVY 179

Query: 181 RHRKNIGNLLAGKESRIGDKKK 202
           RH KNIGNLLAGKESR+G KKK
Sbjct: 180 RHSKNIGNLLAGKESRLGSKKK 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 484,633
Number of extensions: 19764
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 126
Effective length of database: 928,958
Effective search space: 117048708
Effective search space used: 117048708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)